Expression and function of epithelial cell adhesion molecule EpCAM: where are we after 40 years?

O Gires, M Pan, H Schinke, M Canis… - Cancer and Metastasis …, 2020 - Springer
EpCAM (epithelial cell adhesion molecule) was discovered four decades ago as a tumor
antigen on colorectal carcinomas. Owing to its frequent and high expression on carcinomas …

Prevention of tumor risk associated with the reprogramming of human pluripotent stem cells

K Wuputra, CC Ku, DC Wu, YC Lin, S Saito… - Journal of Experimental …, 2020 - Springer
Human pluripotent embryonic stem cells have two special features: self-renewal and
pluripotency. It is important to understand the properties of pluripotent stem cells and …

Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets

S Zhang, S Pyne, S Pietrzak, S Halberg… - Nature …, 2023 - nature.com
Cell type-specific gene expression patterns are outputs of transcriptional gene regulatory
networks (GRNs) that connect transcription factors and signaling proteins to target genes …

Diverse partial reprogramming strategies restore youthful gene expression and transiently suppress cell identity

AE Roux, C Zhang, J Paw, J Zavala-Solorio… - Cell Systems, 2022 - cell.com
Partial pluripotent reprogramming can reverse features of aging in mammalian cells, but the
impact on somatic identity and the necessity of individual reprogramming factors remain …

DOT1L is a barrier to histone acetylation during reprogramming to pluripotency

CK Wille, X Zhang, SA Haws, JM Denu… - Science …, 2023 - science.org
Embryonic stem cells (ESCs) have transcriptionally permissive chromatin enriched for gene
activation–associated histone modifications. A striking exception is DOT1L-mediated H3K79 …

Synthetic genetic circuits to uncover the OCT4 trajectories of successful reprogramming of human fibroblasts

K Ilia, N Shakiba, T Bingham, RD Jones… - Science …, 2023 - science.org
Reprogramming human fibroblasts to induced pluripotent stem cells (iPSCs) is inefficient,
with heterogeneity among transcription factor (TF) trajectories driving divergent cell states …

[HTML][HTML] The transcription factor code in iPSC reprogramming

W Deng, EC Jacobson, AJ Collier, K Plath - Current opinion in genetics & …, 2021 - Elsevier
Transcription factor (TF)-induced reprogramming of somatic cells across lineages and to
induced pluripotent stem cells (iPSCs) has revealed a remarkable plasticity of differentiated …

Expansion of the neocortex and protection from neurodegeneration by in vivo transient reprogramming

YR Shen, S Zaballa, X Bech, A Sancho-Balsells… - Cell Stem Cell, 2024 - cell.com
Yamanaka factors (YFs) can reverse some aging features in mammalian tissues, but their
effects on the brain remain largely unexplored. Here, we induced YFs in the mouse brain in …

Heat shock protein family A member 8 serving as a co-activator of transcriptional factor ETV4 up-regulates PHLDA2 to promote the growth of liver cancer

S Wang, Y Wang, G Yang, H Zhang, H Yuan… - Acta Pharmacologica …, 2023 - nature.com
Heat shock protein family A member 8 (HSPA8) participates in the folding or degradation of
misfolded proteins under stress and plays critical roles in cancer. In this study, we …

Enhanced chromatin accessibility contributes to X chromosome dosage compensation in mammals

I Talon, A Janiszewski, B Theeuwes, T Lefevre, J Song… - Genome Biology, 2021 - Springer
Background Precise gene dosage of the X chromosomes is critical for normal development
and cellular function. In mice, XX female somatic cells show transcriptional X chromosome …