Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
High-level classification of the Fungi and a tool for evolutionary ecological analyses
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …
DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions
DNA metabarcoding, especially when coupled with high‐through‐put DNA sequencing, is
currently revolutionizing our capacity to assess biodiversity across a full range of taxa and …
currently revolutionizing our capacity to assess biodiversity across a full range of taxa and …
Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
DNA metabarcoding is promising for cost-effective biodiversity monitoring, but reliable
diversity estimates are difficult to achieve and validate. Here we present and validate a …
diversity estimates are difficult to achieve and validate. Here we present and validate a …
Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
The importance of 16S rRNA gene amplicon profiles for understanding the influence of
microbes in a variety of environments coupled with the steep reduction in sequencing costs …
microbes in a variety of environments coupled with the steep reduction in sequencing costs …
A critical review on exploiting the pharmaceutical potential of plant endophytic fungi
The escalating demand for secondary metabolites in international markets poses a severe
threat to many plant species. An unscrupulous collection is also the immediate challenge to …
threat to many plant species. An unscrupulous collection is also the immediate challenge to …
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a
very limited understanding about their diversity and distribution. This data article releases a …
very limited understanding about their diversity and distribution. This data article releases a …
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …