Twenty years of rice genomics research: From sequencing and functional genomics to quantitative genomics

C Wang, B Han - Molecular Plant, 2022 - cell.com
Since the completion of the rice genome sequencing project in 2005, we have entered the
era of rice genomics, which is still in its ascendancy. Rice genomics studies can be …

Embryo rescue in plant breeding

U Rogo, M Fambrini, C Pugliesi - Plants, 2023 - mdpi.com
Embryo rescue (ER) techniques are among the oldest and most successful in vitro tissue
culture protocols used with plant species. ER refers to a series of methods that promote the …

[HTML][HTML] Rice functional genomics research: past decade and future

Y Li, J Xiao, L Chen, X Huang, Z Cheng, B Han… - Molecular plant, 2018 - cell.com
Rice (Oryza sativa) is a major staple food crop for more than 3.5 billion people worldwide.
Understanding the regulatory mechanisms of complex agronomic traits in rice is critical for …

Multifaceted roles of transcription factors during plant embryogenesis

HY Yuan, S Kagale, AMR Ferrie - Frontiers in Plant Science, 2024 - frontiersin.org
Transcription factors (TFs) are diverse groups of regulatory proteins. Through their specific
binding domains, TFs bind to their target genes and regulate their expression, therefore TFs …

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

J Palovaara, S Saiga, JR Wendrich… - Nature Plants, 2017 - nature.com
During early plant embryogenesis, precursors for all major tissues and stem cells are
formed. While several components of the regulatory framework are known, how cell fates are …

Developmental and genomic architecture of plant embryogenesis: from model plant to crops

A Armenta-Medina, CS Gillmor, P Gao… - Plant …, 2021 - cell.com
Embryonic development represents an important reproductive phase of sexually
reproducing plant species. The fusion of egg and sperm produces the plant zygote, a …

Conserved, divergent and heterochronic gene expression during Brachypodium and Arabidopsis embryo development

Z Hao, Z Zhang, D Xiang, P Venglat, J Chen, P Gao… - Plant Reproduction, 2021 - Springer
Key message Developmental and transcriptomic analysis of Brachypodium embryogenesis
and comparison with Arabidopsis identifies conserved and divergent phases of …

Evolution, initiation, and diversity in early plant embryogenesis

T Radoeva, P Vaddepalli, Z Zhang, D Weijers - Developmental Cell, 2019 - cell.com
During embryogenesis in plants, cell identities are specified de novo, starting from a single
cell. By combining imaging, genomic profiling, and genetics, principles of early plant …

Hormonal regulation of cereal endosperm development with a focus on rice (Oryza sativa)

MA Basunia, HM Nonhebel - Functional Plant Biology, 2019 - CSIRO Publishing
The endosperm of cereal grain forms the staple diet for most of the world's population, and
feeds much of their stock. Grain size and quality are determined largely by events taking …

Evolution of plant cell-type-specific cis-regulatory elements

H Yan, JP Mendieta, X Zhang, AP Marand, Y Liang… - bioRxiv, 2024 - biorxiv.org
Cis-regulatory elements (CREs) are critical in coordinating the regulation of gene
expression. Understanding how CREs evolve represents a challenging endeavor. Here, we …