Advances and limits of using population genetics to understand local adaptation

P Tiffin, J Ross-Ibarra - Trends in ecology & evolution, 2014 - cell.com
Local adaptation shapes species diversity, can be a stepping stone to ecological speciation,
and can facilitate species range expansion. Population genetic analyses, which complement …

Evolutionary processes from the perspective of flowering time diversity

A Gaudinier, BK Blackman - New Phytologist, 2020 - Wiley Online Library
Although it is well appreciated that genetic studies of flowering time regulation have led to
fundamental advances in the fields of molecular and developmental biology, the ways in …

Lost in parameter space: a road map for stacks

JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …

Ecological genomics meets community‐level modelling of biodiversity: Mapping the genomic landscape of current and future environmental adaptation

MC Fitzpatrick, SR Keller - Ecology letters, 2015 - Wiley Online Library
Local adaptation is a central feature of most species occupying spatially heterogeneous
environments, and may factor critically in responses to environmental change. However …

Maladaptation, migration and extirpation fuel climate change risk in a forest tree species

AV Gougherty, SR Keller, MC Fitzpatrick - Nature Climate Change, 2021 - nature.com
Accounting for population-level adaptation and migration remains a central challenge to
predicting climate change effects on biodiversity. Assessing how climate change could …

Robust identification of local adaptation from allele frequencies

T Günther, G Coop - Genetics, 2013 - academic.oup.com
Comparing allele frequencies among populations that differ in environment has long been a
tool for detecting loci involved in local adaptation. However, such analyses are complicated …

Experimental support for genomic prediction of climate maladaptation using the machine learning approach Gradient Forests

MC Fitzpatrick, VE Chhatre… - Molecular Ecology …, 2021 - Wiley Online Library
Gradient Forests (GF) is a machine learning algorithm that is gaining in popularity for
studying the environmental drivers of genomic variation and for incorporating genomic …

Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa

AD McKown, RD Guy, J Klápště, A Geraldes… - New …, 2014 - Wiley Online Library
P opulus trichocarpa is widespread across western North America spanning extensive
variation in photoperiod, growing season and climate. We investigated trait variation in P …

From common gardens to candidate genes: exploring local adaptation to climate in red spruce

T Capblancq, S Lachmuth, MC Fitzpatrick… - New …, 2023 - Wiley Online Library
Local adaptation to climate is common in plant species and has been studied in a range of
contexts, from improving crop yields to predicting population maladaptation to future …

Genome‐wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa

AD McKown, J Klápště, RD Guy, A Geraldes… - New …, 2014 - Wiley Online Library
In order to uncover the genetic basis of phenotypic trait variation, we used 448 unrelated
wild accessions of black cottonwood (Populus trichocarpa) from much of its range in western …