Bioimage informatics: a new area of engineering biology

H Peng - Bioinformatics, 2008 - academic.oup.com
In recent years, the deluge of complicated molecular and cellular microscopic images
creates compelling challenges for the image computing community. There has been an …

Tracking in cell and developmental biology

E Meijering, O Dzyubachyk, I Smal… - Seminars in cell & …, 2009 - Elsevier
The past decade has seen an unprecedented data explosion in biology. It has become
evident that in order to take full advantage of the potential wealth of information hidden in the …

A database of Caenorhabditis elegans behavioral phenotypes

E Yemini, T Jucikas, LJ Grundy, AEX Brown… - Nature …, 2013 - nature.com
Using low-cost automated tracking microscopes, we have generated a behavioral database
for 305 Caenorhabditis elegans strains, including 76 mutants with no previously described …

Real-time multimodal optical control of neurons and muscles in freely behaving Caenorhabditis elegans

JN Stirman, MM Crane, SJ Husson, S Wabnig… - Nature …, 2011 - nature.com
The ability to optically excite or silence specific cells using optogenetics has become a
powerful tool to interrogate the nervous system. Optogenetic experiments in small organisms …

The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes

D Ramot, BE Johnson, TL Berry Jr, L Carnell… - PloS one, 2008 - journals.plos.org
Background Caenorhabditis elegans locomotion is a simple behavior that has been widely
used to dissect genetic components of behavior, synaptic transmission, and muscle function …

An open-source platform for analyzing and sharing worm-behavior data

A Javer, M Currie, CW Lee, J Hokanson, K Li… - Nature …, 2018 - nature.com
To the Editor—Animal behavior is increasingly being recorded in systematic imaging studies
that generate large datasets. To maximize the usefulness of these data, there is a need for …

A microfabricated array of clamps for immobilizing and imaging C. elegans

SE Hulme, SS Shevkoplyas, J Apfeld, W Fontana… - Lab on a Chip, 2007 - pubs.rsc.org
This paper describes the fabrication of a microfluidic device for rapid immobilization of large
numbers of live C. elegans for performing morphological analysis, microsurgery, and …

A microfluidic platform for high-sensitivity, real-time drug screening on C. elegans and parasitic nematodes

JA Carr, A Parashar, R Gibson, AP Robertson… - Lab on a Chip, 2011 - pubs.rsc.org
This paper describes a new microfluidic platform for screening drugs and their dose
response on the locomotion behavior of free living nematodes and parasitic nematodes. The …

Femtosecond laser nanoaxotomy lab-on-a-chip for in vivo nerve regeneration studies

SX Guo, F Bourgeois, T Chokshi, NJ Durr, MA Hilliard… - Nature …, 2008 - nature.com
A thorough understanding of nerve regeneration in Caenorhabditis elegans requires
performing femtosecond laser nanoaxotomy while minimally affecting the worm. We present …

Anthelmintic drug discovery: into the future

TG Geary, JA Sakanari… - The Journal of …, 2015 - meridian.allenpress.com
The last half-century has provided all of the (few) drugs currently used to treat human
helminthiases. Concern regarding the long-term utility of these drugs, given how readily …