[HTML][HTML] Toward a global virus genomic surveillance network

V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza… - Cell Host & Microbe, 2023 - cell.com
The COVID-19 pandemic galvanized the field of virus genomic surveillance, demonstrating
its utility for public health. Now, we must harness the momentum that led to increased …

Molecular evolution of SARS‐CoV‐2 from December 2019 to August 2022

JM Wolf, LM Wolf, GL Bello… - Journal of Medical …, 2023 - Wiley Online Library
Severe acute respiratorysyndrome coronavirus‐2 (SARS‐CoV‐2) pandemic spread rapidly
and this scenario is concerning worldwide, presenting more than 590 million coronavirus …

[HTML][HTML] Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants

Q Wang, S Iketani, Z Li, L Liu, Y Guo, Y Huang… - Cell, 2023 - cell.com
The BQ and XBB subvariants of SARS-CoV-2 Omicron are now rapidly expanding, possibly
due to altered antibody evasion properties deriving from their additional spike mutations …

Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa

H Tegally, M Moir, J Everatt, M Giovanetti… - Nature medicine, 2022 - nature.com
Abstract Three lineages (BA. 1, BA. 2 and BA. 3) of the severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) Omicron variant of concern predominantly drove South Africa's …

The UCSC genome browser database: 2023 update

LR Nassar, GP Barber, A Benet-Pagès… - Nucleic acids …, 2023 - academic.oup.com
Abstract The UCSC Genome Browser (https://genome. ucsc. edu) is an omics data
consolidator, graphical viewer, and general bioinformatics resource that continues to serve …

SARS-CoV-2 infection in free-ranging white-tailed deer

VL Hale, PM Dennis, DS McBride, JM Nolting… - Nature, 2022 - nature.com
Humans have infected a wide range of animals with SARS-CoV-2,,,–, but the establishment
of a new natural animal reservoir has not been observed. Here we document that free …

Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission

B Pickering, O Lung, F Maguire, P Kruczkiewicz… - Nature …, 2022 - nature.com
Wildlife reservoirs of broad-host-range viruses have the potential to enable evolution of viral
variants that can emerge to infect humans. In North America, there is phylogenomic …

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer

SV Kuchipudi, M Surendran-Nair… - Proceedings of the …, 2022 - National Acad Sciences
Many animal species are susceptible to severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) infection and could act as reservoirs; however, transmission in free-living …

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India

MS Dhar, R Marwal, R Vs, K Ponnusamy, B Jolly… - Science, 2021 - science.org
Delhi, the national capital of India, experienced multiple severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of> …

Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic

B Jackson, MF Boni, MJ Bull, A Colleran… - Cell, 2021 - cell.com
We present evidence for multiple independent origins of recombinant SARS-CoV-2 viruses
sampled from late 2020 and early 2021 in the United Kingdom. Their genomes carry single …