Deep mutational scanning of proteins in mammalian cells

S Maes, N Deploey, F Peelman, S Eyckerman - Cell Reports Methods, 2023 - cell.com
Protein mutagenesis is essential for unveiling the molecular mechanisms underlying protein
function in health, disease, and evolution. In the past decade, deep mutational scanning …

[HTML][HTML] Nanobodies: from high-throughput identification to therapeutic development

PC Fridy, MP Rout, NE Ketaren - Molecular & Cellular Proteomics, 2024 - Elsevier
The camelid single-domain antibody fragment, commonly referred to as a nanobody,
achieves the targeting power of conventional monoclonal antibodies (mAbs) at only a …

Multiplexed profiling of intracellular protein abundance, activity, interactions and druggability with LABEL-seq

JJ Simon, DM Fowler, DJ Maly - Nature Methods, 2024 - nature.com
Here we describe labeling with barcodes and enrichment for biochemical analysis by
sequencing (LABEL-seq), an assay for massively parallel profiling of pooled protein variants …

Rapid discovery and evolution of nanosensors containing fluorogenic amino acids

E Kuru, J Rittichier, H de Puig, A Flores, S Rout… - Nature …, 2024 - nature.com
Binding-activated optical sensors are powerful tools for imaging, diagnostics, and
biomolecular sensing. However, biosensor discovery is slow and requires tedious steps in …

Screening, expression, and identification of nanobody against SARS-CoV-2 spike protein

Q Su, W Shi, X Huang, Y Wan, G Li, B Xing, ZP Xu… - Cells, 2022 - mdpi.com
Coronavirus disease 2019 (COVID-19) is caused by the severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2), an infectious disease that has become a serious burden on …

Therapeutic nanobodies against SARS-CoV-2 and other pathogenic human coronaviruses

Y Yang, F Li, L Du - Journal of Nanobiotechnology, 2024 - Springer
Nanobodies, single-domain antibodies derived from variable domain of camelid or shark
heavy-chain antibodies, have unique properties with small size, strong binding affinity, easy …

Deciphering cross-species reactivity of LAMP-1 antibodies using deep mutational epitope mapping and AlphaFold

T Pruvost, M Mathieu, S Dubois, B Maillère, E Vigne… - MAbs, 2023 - Taylor & Francis
Delineating the precise regions on an antigen that are targeted by antibodies has become a
key step for the development of antibody therapeutics. X-ray crystallography and cryogenic …

[HTML][HTML] Epitope mapping via in vitro deep mutational scanning methods and its applications

MM Keen, AD Keith, EA Ortlund - Journal of Biological Chemistry, 2024 - Elsevier
Epitope mapping is a technique employed to define the region of an antigen that elicits an
immune response, providing crucial insight into the structural architecture of the antigen as …

Advances in antibody discovery from human BCR repertoires

Z Xu, HS Ismanto, H Zhou, DS Saputri… - Frontiers in …, 2022 - frontiersin.org
Antibodies make up an important and growing class of compounds used for the diagnosis or
treatment of disease. While traditional antibody discovery utilized immunization of animals to …

Combining deep mutational scanning to heatmap of HLA class II binding of immunogenic sequences to preserve functionality and mitigate predicted immunogenicity

C Sivelle, R Sierocki, Y Lesparre, A Lomet… - Frontiers in …, 2023 - frontiersin.org
Removal of CD4 T cell epitopes from therapeutic antibody sequences is expected to mitigate
their potential immunogenicity, but its application is complicated by the location of their T cell …