Dynamic alternative DNA structures in biology and disease

G Wang, KM Vasquez - Nature Reviews Genetics, 2023 - nature.com
Repetitive elements in the human genome, once considered 'junk DNA', are now known to
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …

[HTML][HTML] Mechanisms of gene duplication and amplification

AB Reams, JR Roth - Cold Spring Harbor perspectives …, 2015 - cshperspectives.cshlp.org
Abstract Changes in gene copy number are among the most frequent mutational events in
all genomes and were among the mutations for which a physical basis was first known. Yet …

DNA: structure and function

RR Sinden, CE Pearson, VN Potaman… - Advances in genome …, 1998 - Elsevier
Publisher Summary This chapter discusses the structure and function of DNA. DNA occupies
a critical role in cells, because it is the source of all intrinsic genetic information. Chemically …

[HTML][HTML] Replication slippage involves DNA polymerase pausing and dissociation

E Viguera, D Canceill, SD Ehrlich - The EMBO journal, 2001 - embopress.org
Genome rearrangements can take place by a process known as replication slippage or copy‐
choice recombination. The slippage occurs between repeated sequences in both …

Instability of repetitive DNA sequences: the role of replication in multiple mechanisms

M Bzymek, ST Lovett - … of the National Academy of Sciences, 2001 - National Acad Sciences
Rearrangements between tandem sequence homologies of various lengths are a major
source of genomic change and can be deleterious to the organism. These rearrangements …

Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business

JE Wedekind, GSC Dance, MP Sowden, HC Smith - Trends in Genetics, 2003 - cell.com
Alteration of mRNA sequence through base modification mRNA editing frequently generates
protein diversity. Several proteins have been identified as being similar to C-to-U mRNA …

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins

I Voineagu, V Narayanan… - Proceedings of the …, 2008 - National Acad Sciences
DNA inverted repeats (IRs) are hotspots of genomic instability in both prokaryotes and
eukaryotes. This feature is commonly attributed to their ability to fold into hairpin-or cruciform …

Folded DNA in action: hairpin formation and biological functions in prokaryotes

D Bikard, C Loot, Z Baharoglu… - … and Molecular Biology …, 2010 - Am Soc Microbiol
Structured forms of DNA with intrastrand pairing are generated in several cellular processes
and are involved in biological functions. These structures may arise on single-stranded DNA …

Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences

ST Lovett - Molecular microbiology, 2004 - Wiley Online Library
Mutations and rearrangements that occur by misalignment during DNA replication are
frequent sources of genetic variation in bacteria. Dislocations between a replicating strand …

[图书][B] Triple-helical nucleic acids

VN Soyfer, VN Potaman - 1996 - books.google.com
The ability of DNA to exist in configurations other than its classical double-stranded form has
been known for many years. There has been a spectacular recent surge of interest in these …