[HTML][HTML] A review of uncertainty quantification in deep learning: Techniques, applications and challenges

M Abdar, F Pourpanah, S Hussain, D Rezazadegan… - Information fusion, 2021 - Elsevier
Uncertainty quantification (UQ) methods play a pivotal role in reducing the impact of
uncertainties during both optimization and decision making processes. They have been …

Deep learning methods for molecular representation and property prediction

Z Li, M Jiang, S Wang, S Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …

Interactiongraphnet: A novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions

D Jiang, CY Hsieh, Z Wu, Y Kang, J Wang… - Journal of medicinal …, 2021 - ACS Publications
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …

Predicting drug–target interaction using a novel graph neural network with 3D structure-embedded graph representation

J Lim, S Ryu, K Park, YJ Choe, J Ham… - Journal of chemical …, 2019 - ACS Publications
We propose a novel deep learning approach for predicting drug–target interaction using a
graph neural network. We introduce a distance-aware graph attention algorithm to …

Artificial intelligence for science in quantum, atomistic, and continuum systems

X Zhang, L Wang, J Helwig, Y Luo, C Fu, Y Xie… - arXiv preprint arXiv …, 2023 - arxiv.org
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …

[HTML][HTML] Advanced machine-learning techniques in drug discovery

M Elbadawi, S Gaisford, AW Basit - Drug Discovery Today, 2021 - Elsevier
Highlights•Machine learning techniques (MLTs) are progressing the drug discovery
process.•Conventional MLTs require large data, lack transparency and are not …

Artificial neural networks in contemporary toxicology research

I Pantic, J Paunovic, J Cumic, S Valjarevic… - Chemico-Biological …, 2023 - Elsevier
Artificial neural networks (ANNs) have a huge potential in toxicology research. They may be
used to predict toxicity of various chemical compounds or classify the compounds based on …

Evaluating scalable uncertainty estimation methods for deep learning-based molecular property prediction

G Scalia, CA Grambow, B Pernici, YP Li… - Journal of chemical …, 2020 - ACS Publications
Advances in deep neural network (DNN)-based molecular property prediction have recently
led to the development of models of remarkable accuracy and generalization ability, with …

Modern Monte Carlo methods for efficient uncertainty quantification and propagation: A survey

J Zhang - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
Uncertainty quantification (UQ) includes the characterization, integration, and propagation of
uncertainties that result from stochastic variations and a lack of knowledge or data in the …

Machine Learning for Predicting the Band Gaps of ABX3 Perovskites from Elemental Properties

V Gladkikh, DY Kim, A Hajibabaei, A Jana… - The Journal of …, 2020 - ACS Publications
The band gap is an important parameter that determines light-harvesting capability of
perovskite materials. It governs the performance of various optoelectronic devices such as …