A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

[HTML][HTML] Exploring new horizons: Empowering computer-assisted drug design with few-shot learning

S Silva-Mendonça, AR de Sousa Vitória… - Artificial Intelligence in …, 2023 - Elsevier
Computational approaches have revolutionized the field of drug discovery, collectively
known as Computer-Assisted Drug Design (CADD). Advancements in computing power …

A bioactivity foundation model using pairwise meta-learning

B Feng, Z Liu, N Huang, Z Xiao, H Zhang… - Nature Machine …, 2024 - nature.com
The bioactivity of compounds plays an important role in drug development and discovery.
Existing machine learning approaches have poor generalizability in bioactivity prediction …

Redundancy-free self-supervised relational learning for graph clustering

S Yi, W Ju, Y Qin, X Luo, L Liu, Y Zhou… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
Graph clustering, which learns the node representations for effective cluster assignments, is
a fundamental yet challenging task in data analysis and has received considerable attention …

HimGNN: a novel hierarchical molecular graph representation learning framework for property prediction

S Han, H Fu, Y Wu, G Zhao, Z Song… - Briefings in …, 2023 - academic.oup.com
Accurate prediction of molecular properties is an important topic in drug discovery. Recent
works have developed various representation schemes for molecular structures to capture …

Rahnet: Retrieval augmented hybrid network for long-tailed graph classification

Z Mao, W Ju, Y Qin, X Luo, M Zhang - Proceedings of the 31st ACM …, 2023 - dl.acm.org
Graph classification is a crucial task in many real-world multimedia applications, where
graphs can represent various multimedia data types such as images, videos, and social …

[HTML][HTML] Portable graph-based rumour detection against multi-modal heterophily

TT Nguyen, Z Ren, TT Nguyen, J Jo… - Knowledge-Based …, 2024 - Elsevier
The propagation of rumours on social media poses an important threat to societies, so that
various techniques for graph-based rumour detection have been proposed recently. Existing …

A diffusion model for poi recommendation

Y Qin, H Wu, W Ju, X Luo, M Zhang - ACM Transactions on Information …, 2023 - dl.acm.org
Next Point-of-Interest (POI) recommendation is a critical task in location-based services that
aim to provide personalized suggestions for the user's next destination. Previous works on …

Zero-shot node classification with graph contrastive embedding network

W Ju, Y Qin, S Yi, Z Mao, K Zheng, L Liu… - … on Machine Learning …, 2023 - openreview.net
This paper studies zero-shot node classification, which aims to predict new classes (ie,
unseen classes) of nodes in a graph. This problem is challenging yet promising in a variety …

GPS: Graph contrastive learning via multi-scale augmented views from adversarial pooling

W Ju, Y Gu, Z Mao, Z Qiao, Y Qin, X Luo… - Science China …, 2025 - Springer
Self-supervised graph representation learning has recently shown considerable promise in
a range of fields, including bioinformatics and social networks. A large number of graph …