An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis
O Strunecký, AP Ivanova, J Mareš - Journal of Phycology, 2023 - Wiley Online Library
Cyanobacterial taxonomy is facing a period of rapid changes thanks to the ease of 16S
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …
and human well‐being. Understanding how biodiversity sustains ecosystems under …
Ancient gene linkages support ctenophores as sister to other animals
A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
Outline of Fungi and fungus-like taxa–2021
NN Wijayawardene, A Mešić, A Pošta, Z Tkalčec… - 2022 - fulir.irb.hr
This paper provides an updated classification of the Kingdom Fungi (including fossil fungi)
and fungus-like taxa. Five-hundred and twenty-three (535) notes are provided for newly …
and fungus-like taxa. Five-hundred and twenty-three (535) notes are provided for newly …
Beginner's guide on the use of PAML to detect positive selection
S Álvarez-Carretero, P Kapli… - Molecular biology and …, 2023 - academic.oup.com
The CODEML program in the PAML package has been widely used to analyze protein-
coding gene sequences to estimate the synonymous and nonsynonymous rates (d S and d …
coding gene sequences to estimate the synonymous and nonsynonymous rates (d S and d …
Global diversity and systematics of Hymenochaetaceae with poroid hymenophore
F Wu, LW Zhou, J Vlasák, YC Dai - Fungal Diversity, 2022 - Springer
Taxonomy and phylogeny of poroid Hymenochaetaceae based on the most comprehensive
phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and …
phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and …
Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
Using PhyloSuite for molecular phylogeny and tree‐based analyses
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …
researchers, conquering the large number of software programs required for a multilocus …
Key innovations and the diversification of Hymenoptera
The order Hymenoptera (wasps, ants, sawflies, and bees) represents one of the most
diverse animal lineages, but whether specific key innovations have contributed to its …
diverse animal lineages, but whether specific key innovations have contributed to its …
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …