Root of the tree: the significance, evolution, and origins of the ribosome

JC Bowman, AS Petrov, M Frenkel-Pinter… - Chemical …, 2020 - ACS Publications
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …

In vitro genetic code reprogramming for the expansion of usable noncanonical amino acids

T Katoh, H Suga - Annual Review of Biochemistry, 2022 - annualreviews.org
Genetic code reprogramming has enabled us to ribosomally incorporate various
nonproteinogenic amino acids (npAAs) into peptides in vitro. The repertoire of usable npAAs …

Ribosomal synthesis and de novo discovery of bioactive foldamer peptides containing cyclic β-amino acids

T Katoh, T Sengoku, K Hirata, K Ogata, H Suga - Nature Chemistry, 2020 - nature.com
Peptides that contain β-amino acids display stable secondary structures, such as helices
and sheets, and are often referred to as foldamers. Cyclic β2, 3-amino acids (cβAAs), such …

Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro

J Lee, KJ Schwarz, DS Kim, JS Moore… - Nature …, 2020 - nature.com
Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is
challenging due to their poor compatibility with the translation apparatus, which evolved to …

Ribosomal synthesis of peptides with multiple β-amino acids

T Fujino, Y Goto, H Suga… - Journal of the American …, 2016 - ACS Publications
The compatibility of β-amino acids with ribosomal translation was studied for decades, but it
has been still unclear whether the ribosome can accept various β-amino acids, and whether …

Elongation Factor P Modulates the Incorporation of Structurally Diverse Noncanonical Amino Acids into Escherichia coli Dihydrofolate Reductase

SM Daskalova, LM Dedkova, R Maini… - Journal of the …, 2023 - ACS Publications
The introduction of noncanonical amino acids into proteins and peptides has been of great
interest for many years and has facilitated the detailed study of peptide/protein structure and …

Ribosomal incorporation of consecutive β-amino acids

T Katoh, H Suga - Journal of the American Chemical Society, 2018 - ACS Publications
Due to their unique characteristics, which are not shared by canonical α-peptides, peptides
that contain stretches of consecutive β-amino acids are attractive scaffolds for novel peptide …

Site-specific incorporation of unnatural amino acids into Escherichia coli recombinant protein: methodology development and recent achievement

S Smolskaya, YA Andreev - Biomolecules, 2019 - mdpi.com
More than two decades ago a general method to genetically encode noncanonical or
unnatural amino acids (NAAs) with diverse physical, chemical, or biological properties in …

Upgrading aminoacyl-tRNA synthetases for genetic code expansion

O Vargas-Rodriguez, A Sevostyanova, D Söll… - Current opinion in …, 2018 - Elsevier
Synthesis of proteins with non-canonical amino acids via genetic code expansion is at the
forefront of synthetic biology. Progress in this field has enabled site-specific incorporation of …

Natural noncanonical protein splicing yields products with diverse β-amino acid residues

BI Morinaka, E Lakis, M Verest, MJ Helf, T Scalvenzi… - Science, 2018 - science.org
Current textbook knowledge holds that the structural scope of ribosomal biosynthesis is
based exclusively on α-amino acid backbone topology. Here we report the genome-guided …