The eukaryotic tree of life from a global phylogenomic perspective
F Burki - Cold Spring Harbor perspectives in biology, 2014 - cshperspectives.cshlp.org
Molecular phylogenetics has revolutionized our knowledge of the eukaryotic tree of life. With
the advent of genomics, a new discipline of phylogenetics has emerged: phylogenomics …
the advent of genomics, a new discipline of phylogenetics has emerged: phylogenomics …
Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …
we review how these studies have used advances in knowledge of molecular evolutionary …
Phylogenomics resolves the timing and pattern of insect evolution
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein …
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein …
Phylogenomics and the evolution of hemipteroid insects
KP Johnson, CH Dietrich, F Friedrich… - Proceedings of the …, 2018 - National Acad Sciences
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
A Criscuolo, S Gribaldo - BMC evolutionary biology, 2010 - Springer
Background The quality of multiple sequence alignments plays an important role in the
accuracy of phylogenetic inference. It has been shown that removing ambiguously aligned …
accuracy of phylogenetic inference. It has been shown that removing ambiguously aligned …
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
Background Next-generation sequencing has provided a wealth of plastid genome
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus …
AS Tanabe - Molecular Ecology Resources, 2011 - Wiley Online Library
Proportional and separate models able to apply different combination of substitution rate
matrix (SRM) and among‐site rate variation model (ASRVM) to each locus are frequently …
matrix (SRM) and among‐site rate variation model (ASRVM) to each locus are frequently …
Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
Background Apoid wasps and bees (Apoidea) are an ecologically and morphologically
diverse group of Hymenoptera, with some species of bees having evolved eusocial …
diverse group of Hymenoptera, with some species of bees having evolved eusocial …
Phylogenomics of Lophotrochozoa with consideration of systematic error
Phylogenomic studies have improved understanding of deep metazoan phylogeny and
show promise for resolving incongruences among analyses based on limited numbers of …
show promise for resolving incongruences among analyses based on limited numbers of …
Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood
We present an evolutionary placement algorithm (EPA) and a Web server for the rapid
assignment of sequence fragments (short reads) to edges of a given phylogenetic tree under …
assignment of sequence fragments (short reads) to edges of a given phylogenetic tree under …