Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

J Šponer, J Leszczynski… - … : Original Research on …, 2001 - Wiley Online Library
This review summarizes results concerning molecular interactions of nucleic acid bases as
revealed by advanced ab initio quantum chemical (QM) calculations published in last few …

Hydrogen Bonding and Stacking of DNA Bases: A Review of Quantum-chemical ab initio Studies

J Šponer, J Leszczynski, P Hobza - Journal of Biomolecular …, 1996 - Taylor & Francis
Ab initio quantum-chemical calculations with inclusion of electron correlation made since
1994 (such reliable calculations were not feasible before) significantly modified our view on …

Accurate interaction energies of hydrogen-bonded nucleic acid base pairs

J Šponer, P Jurecka, P Hobza - Journal of the American Chemical …, 2004 - ACS Publications
Hydrogen-bonded nucleic acids base pairs substantially contribute to the structure and
stability of nucleic acids. The study presents reference ab initio structures and interaction …

Ab initio studies on the radiationless decay mechanisms of the lowest excited singlet states of 9H-adenine

S Perun, AL Sobolewski, W Domcke - Journal of the American …, 2005 - ACS Publications
The mechanisms that are responsible for the rapid deactivation of the 1nπ* and 1ππ*
excited singlet states of the 9H isomer of adenine have been investigated with …

On the convergence of the (ΔECCSD (T)− ΔEMP2) term for complexes with multiple H-bonds

P Jurečka, P Hobza - Chemical physics letters, 2002 - Elsevier
The MP2 and CCSD (T) interaction energies of the following cyclic complexes were studied:
formic acid dimer (FO–FO), formamide dimer (FA–FA), formamidine dimer (FI–FI) …

Double-proton transfer in adenine− thymine and guanine− cytosine base pairs. A post-hartree− fock ab initio study

L Gorb, Y Podolyan, P Dziekonski… - Journal of the …, 2004 - ACS Publications
The results of a comprehensive study on the double-proton transfer in Adenine− Thymine
(AT) and Guanine− Cytosine (GC) base pairs at room temperature in gas phase and with the …

Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution Part 1. Cytosine

SA Trygubenko, TV Bogdan, M Rueda… - Physical Chemistry …, 2002 - pubs.rsc.org
Canonical, enol and imino tautomers of cytosine were studied theoretically in the gas phase,
in a microhydrated environment (1 and 2 waters) and in bulk water. The structures of …

Single versus double proton-transfer reactions in Watson− Crick base pair radical cations. A theoretical study

J Bertran, A Oliva, L Rodríguez-Santiago… - Journal of the …, 1998 - ACS Publications
Single and double proton-transfer reactions in Watson− Crick Guanine− Cytosine (GC) and
Adenine− Thymine (AT) radical cations have been studied using the hybrid density …

Role of electron-driven proton-transfer processes in the excited-state deactivation of the adenine− thymine base pair

S Perun, AL Sobolewski, W Domcke - The Journal of Physical …, 2006 - ACS Publications
Exploratory electronic structure calculations have been performed with the CC2 (simplified
singles and doubles coupled-cluster) method for two conformers of the adenine (A) …

Protonation and deprotonation enthalpies of guanine and adenine and implications for the structure and energy of their complexes with water: comparison with uracil …

AK Chandra, MT Nguyen, T Uchimaru… - The Journal of …, 1999 - ACS Publications
The optimized geometries, harmonic vibrational frequencies, and energies of the cyclic
structures of monohydrated guanine and adenine are computed using density functional …