Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering

DZ Epihov, SA Banwart, SP McGrath… - Environmental …, 2024 - ACS Publications
Enhanced rock weathering (EW) is an emerging atmospheric carbon dioxide removal (CDR)
strategy being scaled up by the commercial sector. Here, we combine multiomics analyses …

Combining 16S Sequencing and qPCR Quantification Reveals Staphylococcus aureus Driven Bacterial Overgrowth in the Skin of Severe Atopic Dermatitis Patients

A De Tomassi, A Reiter, M Reiger, L Rauer… - Biomolecules, 2023 - mdpi.com
Atopic dermatitis (AD) is an inflammatory skin disease with a microbiome dysbiosis towards
a high relative abundance of Staphylococcus aureus. However, information is missing on …

[PDF][PDF] Rothamsted Repository Download

DZ Epihov, SA Banwart… - Environmental …, 2024 - repository.rothamsted.ac.uk
Enhanced rock weathering (EW) is an emerging atmospheric carbon dioxide removal (CDR)
strategy being scaled up by the commercial sector. Here, we combine multiomics analyses …

Protein-Coding Gene Families in Prokaryote Genome Comparisons

D Carhuaricra-Huaman, JC Setubal - Comparative Genomics: Methods …, 2024 - Springer
The identification of orthologous genes is relevant for comparative genomics, phylogenetic
analysis, and functional annotation. There are many computational tools for the prediction of …

Monitoring the Photorhabdus spp. bacterial load in Heterorhabditis bacteriophora dauer juveniles over different storage times and temperatures: A molecular …

C Ogaya, N Huong, M Touceda-González… - Journal of Invertebrate …, 2024 - Elsevier
Biological control products based on the entomopathogenic nematode Heterorhabditis
bacteriophora can vary in virulence (quality). The influence of their symbiotic bacteria …

qPCR‐based quantification reveals high plant host‐specificity of endophytic colonization levels in leaves

CCP de Paula, J Bárta, J Borovec… - American Journal of …, 2024 - Wiley Online Library
Premise Despite the high functional importance of endophytes, we still have limited
understanding of the biotic and abiotic factors that influence colonization of plant hosts along …

GenomeFace: a deep learning-based metagenome binner trained on 43,000 microbial genomes

R Lettich, R Egan, R Riley, Z Wang, A Tritt, L Oliker… - bioRxiv, 2024 - biorxiv.org
Metagenomic binning, the process of grouping DNA sequences into taxonomic units, is
critical for understanding the functions, interactions, and evolutionary dynamics of microbial …

Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes

S Commichaux, T Luan… - PLOS Computational …, 2024 - journals.plos.org
For decades, the 16S rRNA gene has been used to taxonomically classify prokaryotic
species and to taxonomically profile microbial communities. However, the 16S rRNA gene …

Contrasting microbial communities drive iron cycling across global biomes

D Epihov, C Bryce - 2024 - researchsquare.com
The global iron (Fe) cycle governs important aspects of biosphere function by defining Fe
availability thus supporting productivity of terrestrial and ocean ecosystems. However, the …

[PDF][PDF] Combining 16S Sequencing and qPCR Quantification Reveals Staphylococcus aureus Driven Bacterial Overgrowth in the Skin of Severe Atopic Dermatitis …

A De Tomassi, A Reiter, M Reiger, L Rauer… - 2023 - opus.bibliothek.uni-augsburg.de
Atopic dermatitis (AD) is an inflammatory skin disease with a microbiome dysbiosis towards
a high relative abundance of Staphylococcus aureus. However, information is missing on …