Network pharmacology: curing causal mechanisms instead of treating symptoms

C Nogales, ZM Mamdouh, M List, C Kiel… - Trends in …, 2022 - cell.com
For complex diseases, most drugs are highly ineffective, and the success rate of drug
discovery is in constant decline. While low quality, reproducibility issues, and translational …

Dynamic versus static biomarkers in cancer immune checkpoint blockade: unravelling complexity

WJ Lesterhuis, A Bosco, MJ Millward, M Small… - Nature Reviews Drug …, 2017 - nature.com
Recently, there has been a coordinated effort from academic institutions and the
pharmaceutical industry to identify biomarkers that can predict responses to immune …

A Single‐Molecule Bioelectronic Portable Array for Early Diagnosis of Pancreatic Cancer Precursors

E Genco, F Modena, L Sarcina, K Björkström… - Advanced …, 2023 - Wiley Online Library
A cohort of 47 patients is screened for pancreatic cancer precursors with a portable 96‐well
bioelectronic sensing‐array for single‐molecule assay in cysts fluid and blood plasma …

Equipment-free and visual detection of multiple biomarkers via an aggregation induced emission luminogen-based paper biosensor

H Li, H Lin, W Lv, P Gai, F Li - Biosensors and Bioelectronics, 2020 - Elsevier
Early and accurate disease diagnosis is of great appeal for saving patients' life, but requires
biomarkers to be sensitively detected with simplicity, convenience, and low cost. Exploring …

Personalized characterization of diseases using sample-specific networks

X Liu, Y Wang, H Ji, K Aihara, L Chen - Nucleic acids research, 2016 - academic.oup.com
A complex disease generally results not from malfunction of individual molecules but from
dysfunction of the relevant system or network, which dynamically changes with time and …

Dynamic network biomarker indicates pulmonary metastasis at the tipping point of hepatocellular carcinoma

B Yang, M Li, W Tang, W Liu, S Zhang, L Chen… - Nature …, 2018 - nature.com
Developing predictive biomarkers that can detect the tipping point before metastasis of
hepatocellular carcinoma (HCC), is critical to prevent further irreversible deterioration. To …

Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data

M Leclercq, B Vittrant, ML Martin-Magniette… - Frontiers in …, 2019 - frontiersin.org
The identification of biomarker signatures in omics molecular profiling is usually performed
to predict outcomes in a precision medicine context, such as patient disease susceptibility …

Inference of gene regulatory network based on local Bayesian networks

F Liu, SW Zhang, WF Guo, ZG Wei… - PLoS computational …, 2016 - journals.plos.org
The inference of gene regulatory networks (GRNs) from expression data can mine the direct
regulations among genes and gain deep insights into biological processes at a network …

Robustness and lethality in multilayer biological molecular networks

X Liu, E Maiorino, A Halu, K Glass, RB Prasad… - Nature …, 2020 - nature.com
Robustness is a prominent feature of most biological systems. Most previous related studies
have been focused on homogeneous molecular networks. Here we propose a …

Comprehensive metabolic profiling and genome-wide analysis reveal therapeutic modalities for hepatocellular carcinoma

F Qi, J Li, Z Qi, J Zhang, B Zhou, B Yang, W Qin, W Cui… - Research, 2023 - spj.science.org
Understanding the details of metabolic reprogramming in hepatocellular carcinoma (HCC) is
critical to improve stratification for therapy. Both multiomics analysis and cross-cohort …