The intriguing landscape of single‐cell protein analysis

H Xie, X Ding - Advanced Science, 2022 - Wiley Online Library
Profiling protein expression at single‐cell resolution is essential for fundamental biological
research (such as cell differentiation and tumor microenvironmental examination) and …

Beyond the message: advantages of snapshot proteomics with single‐cell mass cytometry in solid tumors

AM Mistry, AR Greenplate, RA Ihrie… - The FEBS journal, 2019 - Wiley Online Library
Single‐cell technologies that can quantify features of individual cells within a tumor are
critical for treatment strategies aiming to target cancer cells while sparing or activating …

The Euler characteristic: A general topological descriptor for complex data

A Smith, VM Zavala - Computers & Chemical Engineering, 2021 - Elsevier
Datasets are mathematical objects (eg, point clouds, matrices, graphs, images,
fields/functions) that have shape. This shape encodes important knowledge about the …

Topological data analysis: concepts, computation, and applications in chemical engineering

AD Smith, P Dłotko, VM Zavala - Computers & Chemical Engineering, 2021 - Elsevier
A primary hypothesis that drives scientific and engineering studies is that data has structure.
The dominant paradigms for describing such structure are statistics (eg, moments …

Combined single-cell measurement of cytokine mRNA and protein identifies T cells with persistent effector function

BP Nicolet, A Guislain, MC Wolkers - The Journal of Immunology, 2017 - journals.aai.org
Effective T cell responses entail the coproduction of IFN-γ, TNF-α, and IL-2. Cytokine
production is determined by transcriptional and posttranscriptional events. However …

Simultaneous detection of protein and mRNA in Jurkat and KG‐1a cells by mass cytometry

A Mavropoulos, B Allo, M He, E Park… - Cytometry Part …, 2017 - Wiley Online Library
Mass cytometry uniquely enables high‐dimensional single‐cell analysis of complex
populations. This recently developed technology is based on inductively coupled time‐of …

RNA flow cytometry using the branched DNA technique

KT Soh, PK Wallace - Flow Cytometry Protocols, 2018 - Springer
The systematic modulation of mRNA and proteins governs the complicated and intermingled
biological functions of our cells. Traditionally, transcriptomic technologies such as DNA …

[PDF][PDF] Glioblastoma stem-like cells: approaches for isolation and characterization

ES Molina, MM Pillat, V Moura-Neto, TT Lah… - J Cancer Stem Cell …, 2014 - stemonco.com
Glioblastoma (GBM) stem-like cells (GSCs) represent the most undifferentiated state of
malignant cells with distinct biological characteristics. The fraction of these cells within a glial …

Deciphering cellular complexity: advances and future directions in single-cell protein analysis

Q Zhao, S Li, L Krall, Q Li, R Sun, Y Yin, J Fu… - … in Bioengineering and …, 2025 - frontiersin.org
Single-cell protein analysis has emerged as a powerful tool for understanding cellular
heterogeneity and deciphering the complex mechanisms governing cellular function and …

Measuring T Cell Responses by Flow Cytometry–Based Fluorescence In Situ Hybridization

JJ Freen-van Heeren, BP Nicolet… - Critical Reviews™ in …, 2018 - dl.begellhouse.com
ABSTRACT T cells produce a wide variety of effector molecules in response to infections,
such as cytokines, chemokines, granzymes, and perforins. Because different stimuli promote …