Maternal immunological adaptation during normal pregnancy

B Abu-Raya, C Michalski, M Sadarangani… - Frontiers in …, 2020 - frontiersin.org
The risk and severity of specific infections are increased during pregnancy due to a
combination of physiological and immunological changes. Characterizing the maternal …

Sexual dimorphism in innate immunity: the role of sex hormones and epigenetics

R Shepherd, AS Cheung, K Pang, R Saffery… - Frontiers in …, 2021 - frontiersin.org
Sexual dimorphism refers to differences between biological sexes that extend beyond
sexual characteristics. In humans, sexual dimorphism in the immune response has been …

Mapping systemic lupus erythematosus heterogeneity at the single-cell level

D Nehar-Belaid, S Hong, R Marches, G Chen… - Nature …, 2020 - nature.com
Patients with systemic lupus erythematosus (SLE) display a complex blood transcriptome
whose cellular origin is poorly resolved. Using single-cell RNA sequencing, we profiled …

Type I interferon in the pathogenesis of systemic lupus erythematosus

M Postal, JF Vivaldo, R Fernandez-Ruiz… - Current opinion in …, 2020 - Elsevier
Highlights•Type I IFN is implicated in SLE pathogenesis by multiple lines of evidence,
including genetics and induction of SLE by IFN treatment.•Nucleic-acid sensing pathways …

The how and why of lncRNA function: an innate immune perspective

EK Robinson, S Covarrubias, S Carpenter - Biochimica et Biophysica Acta …, 2020 - Elsevier
Next-generation sequencing has provided a more complete picture of the composition of the
human transcriptome indicating that much of the “blueprint” is a vastness of poorly …

Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data

Y Yang, H Sun, Y Zhang, T Zhang, J Gong, Y Wei… - Cell reports, 2021 - cell.com
Transcriptomic analysis plays a key role in biomedical research. Linear dimensionality
reduction methods, especially principal-component analysis (PCA), are widely used in …

The pathogenesis of systemic lupus erythematosus: harnessing big data to understand the molecular basis of lupus

MD Catalina, KA Owen, AC Labonte, AC Grammer… - Journal of …, 2020 - Elsevier
Systemic lupus erythematosus (SLE) is a chronic, systemic autoimmune disease that causes
damage to multiple organ systems. Despite decades of research and available murine …

An introduction to machine learning and analysis of its use in rheumatic diseases

KM Kingsmore, CE Puglisi, AC Grammer… - Nature Reviews …, 2021 - nature.com
Abstract Machine learning (ML) is a computerized analytical technique that is being
increasingly employed in biomedicine. ML often provides an advantage over explicitly …

Sex differences in innate and adaptive immunity impact fetal, placental, and maternal health

KJ Baines, RC West - Biology of reproduction, 2023 - academic.oup.com
The differences between males and females begin shortly after birth, continue throughout
prenatal development, and eventually extend into childhood and adult life. Male embryos …

Harnessing large language models (LLMs) for candidate gene prioritization and selection

M Toufiq, D Rinchai, E Bettacchioli, BSA Kabeer… - Journal of Translational …, 2023 - Springer
Background Feature selection is a critical step for translating advances afforded by systems-
scale molecular profiling into actionable clinical insights. While data-driven methods are …