Flavonoids: a metabolic network mediating plants adaptation to their real estate

A Mouradov, G Spangenberg - Frontiers in plant science, 2014 - frontiersin.org
From an evolutionary perspective, the emergence of the sophisticated chemical scaffolds of
flavonoid molecules represents a key step in the colonization of Earth's terrestrial …

[HTML][HTML] Green systems biology—from single genomes, proteomes and metabolomes to ecosystems research and biotechnology

W Weckwerth - Journal of proteomics, 2011 - Elsevier
Plants have shaped our human life form from the outset. With the emerging recognition of
world population feeding, global climate change and limited energy resources with fossil …

Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism

S Schmollinger, T Mühlhaus, NR Boyle, IK Blaby… - The Plant …, 2014 - academic.oup.com
Nitrogen (N) is a key nutrient that limits global primary productivity; hence, N-use efficiency is
of compelling interest in agriculture and aquaculture. We used Chlamydomonas reinhardtii …

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

B Usadel, F Poree, A Nagel, M Lohse… - Plant, cell & …, 2009 - Wiley Online Library
MapMan is a software tool that supports the visualization of profiling data sets in the context
of existing knowledge. Scavenger modules generate hierarchical and essentially non …

QuantPrime–a flexible tool for reliable high-throughput primer design for quantitative PCR

S Arvidsson, M Kwasniewski, DM Riaño-Pachón… - BMC …, 2008 - Springer
Background Medium-to large-scale expression profiling using quantitative polymerase chain
reaction (qPCR) assays are becoming increasingly important in genomics research. A major …

The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis

JJ Park, H Wang, M Gargouri, RR Deshpande… - The Plant …, 2015 - Wiley Online Library
Drastic alteration in macronutrients causes large changes in gene expression in the
photosynthetic unicellular alga Chlamydomonas reinhardtii. Preliminary data suggested that …

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii

NR Boyle, JA Morgan - BMC systems biology, 2009 - Springer
Background Photosynthetic organisms convert atmospheric carbon dioxide into numerous
metabolites along the pathways to make new biomass. Aquatic photosynthetic organisms …

Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers

M Kerou, P Offre, L Valledor, SS Abby… - Proceedings of the …, 2016 - National Acad Sciences
Ammonia-oxidizing archaea (AOA) are among the most abundant microorganisms and key
players in the global nitrogen and carbon cycles. They share a common energy metabolism …

PredAlgo: a new subcellular localization prediction tool dedicated to green algae

M Tardif, A Atteia, M Specht, G Cogne… - Molecular biology …, 2012 - academic.oup.com
The unicellular green alga Chlamydomonas reinhardtii is a prime model for deciphering
processes occurring in the intracellular compartments of the photosynthetic cell. Organelle …

Detection of flavonoids in microalgae from different evolutionary lineages

K Goiris, K Muylaert, S Voorspoels, B Noten… - Journal of …, 2014 - Wiley Online Library
Flavonoids are important secondary plant metabolites believed to be present mainly in land
plants. As phenolics were detected previously in microalgae using photometric assays, we …