Analysis of alternative splicing events by RNA sequencing in the ovaries of Xiang pig at estrous and diestrous

LT Tang, XQ Ran, N Mao, FP Zhang, X Niu, YQ Ruan… - Theriogenology, 2018 - Elsevier
Alternative splicing (AS) is an important mechanism for controlling gene expression, which
regulates multiple biological processes in higher organisms. Chinese indigenous Xiang pig …

Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

ME Donaldson, LA Ostrowski, KM Goulet, BJ Saville - BMC genomics, 2017 - Springer
Background Biotrophic fungal plant pathogens cause billions of dollars in losses to North
American crops annually. The model for functional investigation of these fungi is Ustilago …

Genome‐wide characterization of differential transcript usage in Arabidopsis thaliana

D Vaneechoutte, AR Estrada, YC Lin… - The Plant …, 2017 - Wiley Online Library
Alternative splicing and the usage of alternate transcription start‐or stop sites allows a single
gene to produce multiple transcript isoforms. Most plant genes express certain isoforms at a …

Growth medium and incubation temperature alter the Pseudogymnoascus destructans transcriptome: implications in identifying virulence factors

ME Donaldson, CM Davy, KJ Vanderwolf, CKR Willis… - Mycologia, 2018 - Taylor & Francis
Pseudogymnoascus destructans is the causal agent of bat white-nose syndrome (WNS),
which is devastating some North American bat populations. Previous transcriptome studies …

SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data

X Sun, F Zuo, Y Ru, J Guo, X Yan, G Sablok - Computer Methods and …, 2015 - Elsevier
Alternative splicing plays a key role in the regulation of the central dogma. Four major types
of alternative splicing have been classified as intron retention, exon skipping, alternative 5 …

Profiling Novel Alternative Splicing within Multiple Tissues Provides Useful Insights into Porcine Genome Annotation

W Feng, P Zhao, X Zheng, Z Hu, J Liu - Genes, 2020 - mdpi.com
Alternative splicing (AS) is a process during gene expression that results in a single gene
coding for different protein variants. AS contributes to transcriptome and proteome diversity …

Modern Approaches for Transcriptome Analyses in Plants

DM Riaño-Pachón, HF Espitia-Navarro… - Advances in Plant Omics …, 2022 - Springer
The collection of all transcripts in a cell, a tissue, or an organism is called the transcriptome,
or meta-transcriptome when dealing with the transcripts of a community of different …

[PDF][PDF] Identification of regulators and effectors of single-cell C4 morphology by comparative transcriptomics of dark-grown cotyledons of the single-cell C4 plant …

L Hagenau - 2017 - repo.uni-hannover.de
Bienertia sinuspersici is one of four plants currently known to perform C4 photosynthesis
within individual cells (single-cell C4 (SCC4)). The required spatial separation for the …

Profiling novel alternative splicing within multiple tissues puts insight into the porcine genome annotation

W Feng, P Zhao, X Zheng, JF Liu - 2019 - researchsquare.com
Background Alternative splicing (AS) is a process that mRNA precursor splices intron to form
the mature mRNA. AS plays important roles in contributing to transcriptome and proteome …

[PDF][PDF] Profiling novel alternative splicing within multiple tissues puts insight into the porcine genome annotation

J Liu, W Feng, P Zhao, X Zheng - 2019 - scholar.archive.org
Background Alternative splicing (AS) is a process that mRNA precursor splices intron to form
the mature mRNA. AS plays important roles in contributing to transcriptome and proteome …