Recent developments and applications of the MMPBSA method

C Wang, DA Greene, L Xiao, R Qi… - Frontiers in molecular …, 2018 - frontiersin.org
The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been
widely applied as an efficient and reliable free energy simulation method to model molecular …

Pinpointing top inhibitors for GSK3β from pool of indirubin derivatives using rigorous computational workflow and their validation using molecular dynamics (MD) …

V Pandya, P Rao, J Prajapati, RM Rawal… - Scientific Reports, 2024 - nature.com
Glycogen synthase kinase-3β (GSK3β) is a pivotal protein kinase implicated in a spectrum of
debilitating diseases, encompassing cancer, diabetes, and neurodegenerative disorders …

multifunctional ligands with glycogen synthase kinase 3 inhibitory activity as a new direction in drug research for Alzheimer's disease

A Jankowska, G Sataa, AJ Bojarski… - Current Medicinal …, 2021 - ingentaconnect.com
Alzheimer's disease (AD) belongs to the most common forms of dementia that causes a
progressive loss of brain cells and leads to memory impairment and decline of other thinking …

Designing and synthesis of new isatin derivatives as potential CDK2 inhibitors

P Czeleń, A Skotnicka, B Szefler - International Journal of Molecular …, 2022 - mdpi.com
Tumors are still one of the main causes of death; therefore, the search for new therapeutic
agents that will enable the implementation of effective treatment is a significant challenge for …

Screening of potential drug for Alzheimer's disease: A computational study with GSK-3 β inhibition through virtual screening, docking, and molecular dynamics …

ND Elangovan, AK Dhanabalan… - Journal of …, 2021 - Taylor & Francis
The global impact of Alzheimer's disease (AD) necessitates intensive research to find
appropriate and effective drugs. Many studies in AD suggested beta-amyloid plaques and …

Multi-dimensional structural footprint identification for the design of potential scaffolds targeting METTL3 in cancer treatment from natural compounds

AR Issahaku, SM Mncube, C Agoni, SK Kwofie… - Journal of Molecular …, 2023 - Springer
Abstract Context N 6-adenosine-methyltransferase (METTL3) is the catalytic domain of the
'writer'proteins which is involved in the post modifications of N 6-methyladinosine (m 6 A) …

Elucidating the binding mechanisms of GABA and Muscimol as an avenue to discover novel GABA-mimetic small molecules

AR Issahaku, A Wilhelm, M Schutte-Smith… - Journal of …, 2024 - Taylor & Francis
Gamma-aminobutyric acid (GABA) signaling is the principal inhibitory pathway in the central
nervous system. It is critical in neuronal cell proliferation and fate determination. Any …

Identifying potential Alzheimer's disease therapeutics through GSK-3β inhibition: A molecular docking and dynamics approach

Y Mohammadi, R Emadi, A Maddahi, S Shirdel… - … Biology and Chemistry, 2024 - Elsevier
Emerging as a promising drug target for Alzheimer's disease (AD) therapy, glycogen
synthase kinase 3β (GSK-3β) has garnered attention. This study sought to rigorously …

Inhibition mechanism of CDK-2 and GSK-3β by a sulfamoylphenyl derivative of indoline—a molecular dynamics study

P Czeleń - Journal of Molecular Modeling, 2017 - Springer
A good understanding of the inhibition mechanism of enzymes exhibiting high levels of
similarity is the first step to the discovery of new drugs with selective potential. Examples of …

Leveraging Flavonoids as Potential Inhibitors of METTL3 in Combating Cancer: A Combined Structure‐Based Drug Design and DFT Approach

NE Abo‐Dya, AR Issahaku - ChemistrySelect, 2023 - Wiley Online Library
Abstract Methyltransferase‐like 3 (METTL3) serves as a primary catalytic enzyme within the
N6‐methyladenosine (m6 A) methyltransferase system, playing a crucial role in various …