Watching proteins wiggle: mapping structures with two-dimensional infrared spectroscopy

A Ghosh, JS Ostrander, MT Zanni - Chemical reviews, 2017 - ACS Publications
Proteins exhibit structural fluctuations over decades of time scales. From the picosecond
side chain motions to aggregates that form over the course of minutes, characterizing protein …

Site-specific infrared probes of proteins

J Ma, IM Pazos, W Zhang, RM Culik… - Annual review of …, 2015 - annualreviews.org
Infrared spectroscopy has played an instrumental role in the study of a wide variety of
biological questions. However, in many cases, it is impossible or difficult to rely on the …

Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes

SD Fried, S Bagchi, SG Boxer - Journal of the American Chemical …, 2013 - ACS Publications
Vibrational probes can provide a direct readout of the local electrostatic field in complex
molecular environments, such as protein binding sites and enzyme active sites. This …

Amino acid side chain contribution to protein FTIR spectra: impact on secondary structure evaluation

J De Meutter, E Goormaghtigh - European Biophysics Journal, 2021 - Springer
Prediction of protein secondary structure from FTIR spectra usually relies on the absorbance
in the amide I–amide II region of the spectrum. It assumes that the absorbance in this …

[图书][B] Ultrafast infrared vibrational spectroscopy

MD Fayer - 2013 - books.google.com
The advent of laser-based sources of ultrafast infrared pulses has extended the study of very
fast molecular dynamics to the observation of processes manifested through their effects on …

Ultrafast spectroscopy reveals slow water dynamics in biocondensates

KA Lorenz-Ochoa, CR Baiz - Journal of the American Chemical …, 2023 - ACS Publications
Cells achieve high spatiotemporal control over biochemical processes through
compartmentalization to membrane-bound as well as membraneless organelles that …

An ultrasensitive electrochemical immunosensor for procalcitonin detection based on the gold nanoparticles-enhanced tyramide signal amplification strategy

P Liu, C Li, R Zhang, Q Tang, J Wei, Y Lu… - Biosensors and …, 2019 - Elsevier
In this study, we established an ultrasensitive electrochemical immunosensor based on the
gold nanoparticles-enhanced tyramide signal amplification (AuNPs-TSA) for the detection of …

Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid …

AM Woys, AM Almeida, L Wang, CC Chiu… - Journal of the …, 2012 - ACS Publications
Infrared spectroscopy is playing an important role in the elucidation of amyloid fiber
formation, but the coupling models that link spectra to structure are not well tested for …

Pump slice amplitudes: a simple and robust method for connecting two-dimensional infrared and Fourier transform infrared spectra

ML Valentine, ZA Al-Mualem… - The Journal of Physical …, 2021 - ACS Publications
Ultrafast two-dimensional infrared (2D IR) spectroscopy and Fourier transform infrared
(FTIR) spectroscopy are often performed in tandem, with FTIR typically used to interpret and …

Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer

A Remorino, IV Korendovych, Y Wu, WF DeGrado… - Science, 2011 - science.org
Two-dimensional (2D) vibrational echo spectroscopy has previously been applied to
structural determination of small peptides. Here we extend the technique to a more complex …