Decoding the tumor microenvironment with spatial technologies

LA Walsh, DF Quail - Nature Immunology, 2023 - nature.com
Visualization of the cellular heterogeneity and spatial architecture of the tumor
microenvironment (TME) is becoming increasingly important to understand mechanisms of …

Spatially resolved mass spectrometry at the single cell: recent innovations in proteomics and metabolomics

MJ Taylor, JK Lukowski… - Journal of the American …, 2021 - ACS Publications
Biological systems are composed of heterogeneous populations of cells that
intercommunicate to form a functional living tissue. Biological function varies greatly across …

SODB facilitates comprehensive exploration of spatial omics data

Z Yuan, W Pan, X Zhao, F Zhao, Z Xu, X Li, Y Zhao… - Nature …, 2023 - nature.com
Spatial omics technologies generate wealthy but highly complex datasets. Here we present
Spatial Omics DataBase (SODB), a web-based platform providing both rich data resources …

Single-cell lipidomics enabled by dual-polarity ionization and ion mobility-mass spectrometry imaging

H Zhang, Y Liu, L Fields, X Shi, P Huang, H Lu… - Nature …, 2023 - nature.com
Single-cell (SC) analysis provides unique insight into individual cell dynamics and cell-to-
cell heterogeneity. Here, we utilize trapped ion mobility separation coupled with dual …

The dietary sweetener sucralose is a negative modulator of T cell-mediated responses

F Zani, J Blagih, T Gruber, MD Buck, N Jones… - Nature, 2023 - nature.com
Artificial sweeteners are used as calorie-free sugar substitutes in many food products and
their consumption has increased substantially over the past years. Although generally …

Spatial multi-omics analyses of the tumor immune microenvironment

WC Hsieh, BR Budiarto, YF Wang, CY Lin… - Journal of Biomedical …, 2022 - Springer
In the past decade, single-cell technologies have revealed the heterogeneity of the tumor-
immune microenvironment at the genomic, transcriptomic, and proteomic levels and have …

Deciphering the metabolic heterogeneity of hematopoietic stem cells with single-cell resolution

J Cao, QJ Yao, J Wu, X Chen, L Huang, W Liu, K Qian… - Cell Metabolism, 2024 - cell.com
Metabolic status is crucial for stem cell functions; however, the metabolic heterogeneity of
endogenous stem cells has never been directly assessed. Here, we develop a platform for …

Spatial metabolomics and imaging mass spectrometry in the age of artificial intelligence

T Alexandrov - Annual review of biomedical data science, 2020 - annualreviews.org
Spatial metabolomics is an emerging field of omics research that has enabled localizing
metabolites, lipids, and drugs in tissue sections, a feat considered impossible just two …

High spatial resolution mass spectrometry imaging for spatial metabolomics: Advances, challenges, and future perspectives

S Ma, Y Leng, X Li, Y Meng, Z Yin, W Hang - TrAC Trends in Analytical …, 2023 - Elsevier
Spatial metabolomics is an emerging field of omics research that has enabled localizing
small molecules in tissues and cells. Mass spectrometry imaging (MSI) technologies allow …

Comprehensive mapping of neurotransmitter networks by MALDI–MS imaging

M Shariatgorji, A Nilsson, E Fridjonsdottir… - Nature …, 2019 - nature.com
We present a mass spectrometry imaging (MSI) approach for the comprehensive mapping of
neurotransmitter networks in specific brain regions. Our fluoromethylpyridinium-based …