Histone lysine methylation dynamics: establishment, regulation, and biological impact

JC Black, C Van Rechem, JR Whetstine - Molecular cell, 2012 - cell.com
Histone lysine methylation has emerged as a critical player in the regulation of gene
expression, cell cycle, genome stability, and nuclear architecture. Over the past decade, a …

The Caenorhabditis elegans Transgenic Toolbox

J Nance, C Frøkjær-Jensen - Genetics, 2019 - academic.oup.com
The power of any genetic model organism is derived, in part, from the ease with which gene
expression can be manipulated. The short generation time and invariant developmental …

Condensin-driven remodelling of X chromosome topology during dosage compensation

E Crane, Q Bian, RP McCord, BR Lajoie, BS Wheeler… - Nature, 2015 - nature.com
The three-dimensional organization of a genome plays a critical role in regulating gene
expression, yet little is known about the machinery and mechanisms that determine higher …

Comparative analysis of metazoan chromatin organization

JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami… - Nature, 2014 - nature.com
Genome function is dynamically regulated in part by chromatin, which consists of the
histones, non-histone proteins and RNA molecules that package DNA. Studies in …

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng… - Science, 2010 - science.org
We systematically generated large-scale data sets to improve genome annotation for the
nematode Caenorhabditis elegans, a key model organism. These data sets include …

Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans

EL Greer, TJ Maures, D Ucar, AG Hauswirth, E Mancini… - Nature, 2011 - nature.com
Chromatin modifiers regulate lifespan in several organisms, raising the question of whether
changes in chromatin states in the parental generation could be incompletely …

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

F Roudier, I Ahmed, C Bérard, A Sarazin… - The EMBO …, 2011 - embopress.org
Post‐translational modification of histones and DNA methylation are important components
of chromatin‐level control of genome activity in eukaryotes. However, principles governing …

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

S Bonn, RP Zinzen, C Girardot, EH Gustafson… - Nature …, 2012 - nature.com
Chromatin modifications are associated with many aspects of gene expression, yet their role
in cellular transitions during development remains elusive. Here, we use a new approach to …

Functional implications of genome topology

G Cavalli, T Misteli - Nature structural & molecular biology, 2013 - nature.com
Although genomes are defined by their sequence, the linear arrangement of nucleotides is
only their most basic feature. A fundamental property of genomes is their topological …

Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery

BD Towbin, C González-Aguilera, R Sack, D Gaidatzis… - Cell, 2012 - cell.com
The factors that sequester transcriptionally repressed heterochromatin at the nuclear
periphery are currently unknown. In a genome-wide RNAi screen, we found that depletion of …