Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

KS Makarova, YI Wolf, J Iranzo, SA Shmakov… - Nature Reviews …, 2020 - nature.com
The number and diversity of known CRISPR–Cas systems have substantially increased in
recent years. Here, we provide an updated evolutionary classification of CRISPR–Cas …

The biology of CRISPR-Cas: backward and forward

F Hille, H Richter, SP Wong, M Bratovič, S Ressel… - Cell, 2018 - cell.com
In bacteria and archaea, clustered regularly interspaced short palindromic repeats
(CRISPR) and CRISPR-associated (Cas) proteins constitute an adaptive immune system …

CRISPR-Cas: biology, mechanisms and relevance

F Hille, E Charpentier - … of the royal society B: biological …, 2016 - royalsocietypublishing.org
Prokaryotes have evolved several defence mechanisms to protect themselves from viral
predators. Clustered regularly interspaced short palindromic repeats (CRISPR) and their …

Prochlorococcus: the structure and function of collective diversity

SJ Biller, PM Berube, D Lindell… - Nature Reviews …, 2015 - nature.com
The marine cyanobacterium Prochlorococcus is the smallest and most abundant
photosynthetic organism on Earth. In this Review, we summarize our understanding of the …

Evolutionary genomics of defense systems in archaea and bacteria

EV Koonin, KS Makarova, YI Wolf - Annual review of …, 2017 - annualreviews.org
Evolution of bacteria and archaea involves an incessant arms race against an enormous
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …

CRISPRDetect: a flexible algorithm to define CRISPR arrays

A Biswas, RHJ Staals, SE Morales, PC Fineran… - BMC genomics, 2016 - Springer
Background CRISPR (clustered regularly interspaced short palindromic repeats) RNAs
provide the specificity for noncoding RNA-guided adaptive immune defence systems in …

Comparative genomics of defense systems in archaea and bacteria

KS Makarova, YI Wolf, EV Koonin - Nucleic acids research, 2013 - academic.oup.com
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …

Evolutionary ecology of prokaryotic immune mechanisms

S van Houte, A Buckling, ER Westra - Microbiology and Molecular …, 2016 - Am Soc Microbiol
Bacteria have a range of distinct immune strategies that provide protection against
bacteriophage (phage) infections. While much has been learned about the mechanism of …

[HTML][HTML] Parasite exposure drives selective evolution of constitutive versus inducible defense

ER Westra, S van Houte, S Oyesiku-Blakemore… - Current biology, 2015 - cell.com
In the face of infectious disease, organisms evolved a range of defense mechanisms, with a
clear distinction between those that are constitutive (always active) and those that are …

A thermostable Cas9 with increased lifetime in human plasma

LB Harrington, D Paez-Espino, BT Staahl… - Nature …, 2017 - nature.com
CRISPR-Cas9 is a powerful technology that has enabled genome editing in a wide range of
species. However, the currently developed Cas9 homologs all originate from mesophilic …