The biological and clinical significance of emerging SARS-CoV-2 variants

K Tao, PL Tzou, J Nouhin, RK Gupta… - Nature Reviews …, 2021 - nature.com
The past several months have witnessed the emergence of SARS-CoV-2 variants with novel
spike protein mutations that are influencing the epidemiological and clinical aspects of the …

Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

[HTML][HTML] SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity

C Motozono, M Toyoda, J Zahradnik, A Saito… - Cell host & …, 2021 - cell.com
Many SARS-CoV-2 variants with naturally acquired mutations have emerged. These
mutations can affect viral properties such as infectivity and immune resistance. Although the …

Ecology, evolution and spillover of coronaviruses from bats

M Ruiz-Aravena, C McKee, A Gamble, T Lunn… - Nature Reviews …, 2022 - nature.com
In the past two decades, three coronaviruses with ancestral origins in bats have emerged
and caused widespread outbreaks in humans, including severe acute respiratory syndrome …

Recurrent deletions in the SARS-CoV-2 spike glycoprotein drive antibody escape

KR McCarthy, LJ Rennick, S Nambulli… - Science, 2021 - science.org
Zoonotic pandemics, such as that caused by severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2), can follow the spillover of animal viruses into highly susceptible human …

Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants

Y Weisblum, F Schmidt, F Zhang, J DaSilva, D Poston… - elife, 2020 - elifesciences.org
Neutralizing antibodies elicited by prior infection or vaccination are likely to be key for future
protection of individuals and populations against SARS-CoV-2. Moreover, passively …

CRISPR-CasΦ from huge phages is a hypercompact genome editor

P Pausch, B Al-Shayeb, E Bisom-Rapp, CA Tsuchida… - Science, 2020 - science.org
CRISPR-Cas systems are found widely in prokaryotes, where they provide adaptive
immunity against virus infection and plasmid transformation. We describe a minimal …

Coronaviruses and SARS-CoV-2: a brief overview

S Ludwig, A Zarbock - Anesthesia & Analgesia, 2020 - journals.lww.com
In late December 2019, several cases of pneumonia of unknown origin were reported from
China, which in early January 2020 were announced to be caused by a novel coronavirus …

Systematic evaluation of horizontal gene transfer between eukaryotes and viruses

NAT Irwin, AA Pittis, TA Richards, PJ Keeling - Nature microbiology, 2022 - nature.com
Gene exchange between viruses and their hosts acts as a key facilitator of horizontal gene
transfer and is hypothesized to be a major driver of evolutionary change. Our understanding …

Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study

GS Randhawa, MPM Soltysiak, H El Roz… - Plos one, 2020 - journals.plos.org
The 2019 novel coronavirus (renamed SARS-CoV-2, and generally referred to as the COVID-
19 virus) has spread to 184 countries with over 1.5 million confirmed cases. Such major viral …