The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …
population structures within several bacterial genera that include pathogens. Here, we …
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal …
Background The clonal diversity underpinning trends in multidrug resistant Escherichia coli
causing bloodstream infections remains uncertain. We aimed to determine the contribution …
causing bloodstream infections remains uncertain. We aimed to determine the contribution …
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks
The genomic diversity across strains of a species forms the genetic basis for differences in
their behavior. A large-scale assessment of sequence variation has been made possible by …
their behavior. A large-scale assessment of sequence variation has been made possible by …
A comprehensive and high-quality collection of Escherichia coli genomes and their genes
G Horesh, GA Blackwell, G Tonkin-Hill… - Microbial …, 2021 - microbiologyresearch.org
Escherichia coli is a highly diverse organism that includes a range of commensal and
pathogenic variants found across a range of niches and worldwide. In addition to causing …
pathogenic variants found across a range of niches and worldwide. In addition to causing …
A one-year genomic investigation of Escherichia coli epidemiology and nosocomial spread at a large US healthcare network
Abstract Background Extra-intestinal pathogenic Escherichia coli (ExPEC) are a leading
cause of bloodstream and urinary tract infections worldwide. Over the last two decades …
cause of bloodstream and urinary tract infections worldwide. Over the last two decades …
Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms
A Garretto, T Miller-Ensminger, A Ene… - Frontiers in …, 2020 - frontiersin.org
Urinary tract infections (UTIs) are one of the most common human bacterial infections. While
UTIs are commonly associated with colonization by Escherichia coli, members of this …
UTIs are commonly associated with colonization by Escherichia coli, members of this …
EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations
The definition of bacterial species is traditionally a taxonomic issue while bacterial
populations are identified by population genetics. These assignments are species specific …
populations are identified by population genetics. These assignments are species specific …
Extended-Spectrum Beta-Lactamase Producing-Escherichia coli Isolated From Irrigation Waters and Produce in Ecuador
L Montero, J Irazabal, P Cardenas, JP Graham… - Frontiers in …, 2021 - frontiersin.org
In cities across the globe, the majority of wastewater–that includes drug resistant and
pathogenic bacteria among other contaminants–is released into streams untreated. This …
pathogenic bacteria among other contaminants–is released into streams untreated. This …
Virulome and genome analyses identify associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated …
Food animals are known reservoirs of multidrug-resistant (MDR) Escherichia coli, but
information regarding the factors influencing colonization by these organisms is lacking …
information regarding the factors influencing colonization by these organisms is lacking …
Refining the definition of the avian pathogenic Escherichia coli (APEC) pathotype through inclusion of high-risk clonal groups
TJ Johnson, EA Miller, C Flores-Figueroa… - Poultry science, 2022 - Elsevier
Colibacillosis in poultry is a unique disease manifestation of Escherichia coli in the animal
world, as one of the primary routes of entry is via the respiratory tract of birds. Because of …
world, as one of the primary routes of entry is via the respiratory tract of birds. Because of …