Gene regulation in time and space during X-chromosome inactivation

A Loda, S Collombet, E Heard - Nature Reviews Molecular Cell Biology, 2022 - nature.com
X-chromosome inactivation (XCI) is the epigenetic mechanism that ensures X-linked dosage
compensation between cells of females (XX karyotype) and males (XY). XCI is essential for …

[HTML][HTML] Regulatory principles and mechanisms governing the onset of random X-chromosome inactivation

T Schwämmle, EG Schulz - Current Opinion in Genetics & Development, 2023 - Elsevier
Highlights•Complex regulatory interactions ensure female-specific monoallelic Xist
expression.•Stochastic upregulation combined with a negative feedback can explain the Xist …

Activation of Xist by an evolutionarily conserved function of KDM5C demethylase

MK Samanta, S Gayen, C Harris, E Maclary… - Nature …, 2022 - nature.com
XX female and XY male therian mammals equalize X-linked gene expression through the
mitotically-stable transcriptional inactivation of one of the two X chromosomes in female …

Auxin-inducible degron system: an efficient protein degradation tool to study protein function

K Phanindhar, RK Mishra - Biotechniques, 2023 - Taylor & Francis
Targeted protein degradation, with its rapid protein depletion kinetics, allows the
measurement of acute changes in the cell. The auxin-inducible degron (AID) system, rapidly …

SPEN is required for Xist upregulation during initiation of X chromosome inactivation

T Robert-Finestra, BF Tan, H Mira-Bontenbal… - Nature …, 2021 - nature.com
At initiation of X chromosome inactivation (XCI), Xist is monoallelically upregulated from the
future inactive X (Xi) chromosome, overcoming repression by its antisense transcript Tsix …

Control of RNA degradation in cell fate decision

M Deng, X Wang, Z Xiong, P Tang - Frontiers in Cell and …, 2023 - frontiersin.org
Cell fate is shaped by a unique gene expression program, which reflects the concerted
action of multilayered precise regulation. Substantial research attention has been paid to the …

RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes

E Enervald, LM Powell, L Boteva, R Foti… - The EMBO …, 2021 - embopress.org
The onset of random X chromosome inactivation in mouse requires the switch from a
symmetric to an asymmetric state, where the identities of the future inactive and active X …

iDRiP for the systematic discovery of proteins bound directly to noncoding RNA

HP Chu, A Minajigi, Y Chen, R Morris, CY Guh… - Nature protocols, 2021 - nature.com
More than 90% of the human genome is transcribed into noncoding RNAs, but their
functional characterization has lagged behind. A major bottleneck in the understanding of …

Revisiting the consequences of deleting the X inactivation center

H Yin, C Wei, JT Lee - … of the National Academy of Sciences, 2021 - National Acad Sciences
Mammalian cells equalize X-linked dosages between the male (XY) and female (XX) sexes
by silencing one X chromosome in the female sex. This process, known as “X chromosome …

G-quadruplex folding in Xist RNA antagonizes PRC2 activity for stepwise regulation of X chromosome inactivation

YW Lee, U Weissbein, R Blum, JT Lee - Molecular Cell, 2024 - cell.com
How Polycomb repressive complex 2 (PRC2) is regulated by RNA remains an unsolved
problem. Although PRC2 binds G-tracts with the potential to form RNA G-quadruplexes …