[HTML][HTML] Patient-derived organoids in translational oncology and drug screening

R Yang, Y Yu - Cancer Letters, 2023 - Elsevier
Patient-derived organoids (PDO) are a new biomedical research model that can reconstruct
phenotypic and genetic characteristics of the original tissue and are useful for research on …

A microfluidic Braille valve platform for on-demand production, combinatorial screening and sorting of chemically distinct droplets

R Utharala, A Grab, V Vafaizadeh, N Peschke… - Nature protocols, 2022 - nature.com
Droplet microfluidics is a powerful tool for a variety of biological applications including single-
cell genetics, antibody discovery and directed evolution. All these applications make use of …

Network-based machine learning in colorectal and bladder organoid models predicts anti-cancer drug efficacy in patients

JH Kong, H Lee, D Kim, SK Han, D Ha, K Shin… - Nature …, 2020 - nature.com
Cancer patient classification using predictive biomarkers for anti-cancer drug responses is
essential for improving therapeutic outcomes. However, current machine-learning-based …

MAPK inhibitor sensitivity scores predict sensitivity driven by the immune infiltration in pediatric low-grade gliomas

R Sigaud, TK Albert, C Hess, T Hielscher… - Nature …, 2023 - nature.com
Pediatric low-grade gliomas (pLGG) show heterogeneous responses to MAPK inhibitors
(MAPKi) in clinical trials. Thus, more complex stratification biomarkers are needed to identify …

Inhibition of fatty acid synthase upregulates expression of CD36 to sustain proliferation of colorectal cancer cells

J Drury, PG Rychahou, D He, N Jafari, C Wang… - Frontiers in …, 2020 - frontiersin.org
Fatty acid synthase, a key enzyme of de novo lipogenesis, is an attractive therapeutic target
in cancer. The novel fatty acid synthase inhibitor, TVB-3664, shows anti-cancer activity in …

An overview of machine learning methods for monotherapy drug response prediction

F Firoozbakht, B Yousefi… - Briefings in …, 2022 - academic.oup.com
For an increasing number of preclinical samples, both detailed molecular profiles and their
responses to various drugs are becoming available. Efforts to understand, and predict, drug …

A performance evaluation of drug response prediction models for individual drugs

A Park, Y Lee, S Nam - Scientific Reports, 2023 - nature.com
Drug response prediction is important to establish personalized medicine for cancer therapy.
Model construction for predicting drug response (ie, cell viability half-maximal inhibitory …

The clinical kinase index: a method to prioritize understudied kinases as drug targets for the treatment of cancer

D Essegian, R Khurana, V Stathias, SC Schürer - Cell Reports Medicine, 2020 - cell.com
The approval of the first kinase inhibitor, Gleevec, ushered in a paradigm shift for
oncological treatment—the use of genomic data for targeted, efficacious therapies. Since …

Phosphoproteomics guides effective low-dose drug combinations against pancreatic ductal adenocarcinoma

A Vallés-Martí, G Mantini, P Manoukian, C Waasdorp… - Cell reports, 2023 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) is a devastating disease with a limited set of
known driver mutations but considerable cancer cell heterogeneity. Phosphoproteomics …

NeRD: a multichannel neural network to predict cellular response of drugs by integrating multidimensional data

X Cheng, C Dai, Y Wen, X Wang, X Bo, S He, S Peng - BMC medicine, 2022 - Springer
Background Considering the heterogeneity of tumors, it is a key issue in precision medicine
to predict the drug response of each individual. The accumulation of various types of drug …