In silico cancer research towards 3R

C Jean-Quartier, F Jeanquartier, I Jurisica, A Holzinger - BMC cancer, 2018 - Springer
Background Improving our understanding of cancer and other complex diseases requires
integrating diverse data sets and algorithms. Intertwining in vivo and in vitro data and in …

Navigating multi-scale cancer systems biology towards model-driven clinical oncology and its applications in personalized therapeutics

MN Gondal, SU Chaudhary - Frontiers in Oncology, 2021 - frontiersin.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of scale-specific biomolecular data on cancer …

Applied mathematics and nonlinear sciences in the war on cancer

VM Pérez-García, S Fitzpatrick… - Applied Mathematics …, 2016 - sciendo.com
Applied mathematics and nonlinear sciences have an enormous potential for application in
cancer. Mathematical models can be used to raise novel hypotheses to test, develop …

Looking beyond the cancer cell for effective drug combinations

JR Dry, M Yang, J Saez-Rodriguez - Genome medicine, 2016 - Springer
Combinations of therapies are being actively pursued to expand therapeutic options and
deal with cancer's pervasive resistance to treatment. Research efforts to discover effective …

A hybrid three-scale model of tumor growth

HL Rocha, RC Almeida, E Lima… - … Models and Methods …, 2018 - World Scientific
Cancer results from a complex interplay of different biological, chemical, and physical
phenomena that span a wide range of time and length scales. Computational modeling may …

Pharmacokinetics and pharmacodynamics of TAK-164 antibody drug conjugate coadministered with unconjugated antibody

B Menezes, E Khera, M Calopiz, MD Smith, ML Ganno… - The AAPS journal, 2022 - Springer
The development of new antibody–drug conjugates (ADCs) has led to the approval of 7
ADCs by the FDA in 4 years. Given the impact of intratumoral distribution on efficacy of these …

The evolution of systems biology and systems medicine: From mechanistic models to uncertainty quantification

L Qiao, A Khalilimeybodi, NJ Linden-Santangeli… - arXiv preprint arXiv …, 2024 - arxiv.org
Understanding the mechanisms of interactions within cells, tissues, and organisms is crucial
to driving developments across biology and medicine. Mathematical modeling is an …

Methyl-β-cyclodextrin potentiates the BITC-induced anti-cancer effect through modulation of the Akt phosphorylation in human colorectal cancer cells

Q Yang, M Miyagawa, X Liu, B Zhu… - Bioscience …, 2018 - academic.oup.com
Methyl-β-cyclodextrin (MβCD) is an effective agent for the removal of plasma membrane
cholesterol. In this study, we investigated the modulating effects of MβCD on the …

Systems biology for organotypic cell cultures

Translating in vitro biological data into actionable information related to human health holds
the potential to improve disease treatment and risk assessment of chemical exposures …

Multiscale tumor modeling with drug pharmacokinetic and pharmacodynamic profile using stochastic hybrid system

WO Oduola, X Li - Cancer Informatics, 2018 - journals.sagepub.com
Effective cancer treatment strategy requires an understanding of cancer behavior and
development across multiple temporal and spatial scales. This has resulted into a growing …