Variational transition state theory: theoretical framework and recent developments

JL Bao, DG Truhlar - Chemical Society Reviews, 2017 - pubs.rsc.org
This article reviews the fundamentals of variational transition state theory (VTST), its recent
theoretical development, and some modern applications. The theoretical methods reviewed …

Calculation of absolute molecular entropies and heat capacities made simple

P Pracht, S Grimme - Chemical science, 2021 - pubs.rsc.org
We propose a fully-automated composite scheme for the accurate and numerically stable
calculation of molecular entropies by efficiently combining density-functional theory (DFT) …

The hindered rotor theory: A review

E Dzib, G Merino - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Hindered rotations are common in nature and can greatly affect thermodynamic properties.
Typically, the standard rigid‐rotor harmonic‐oscillator approximation is used to compute …

TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids

D Ferro-Costas, I Mosquera-Lois… - Journal of …, 2021 - Springer
In this work, we introduce TorsiFlex, a user-friendly software written in Python 3 and
designed to find all the torsional conformers of flexible acyclic molecules in an automatic …

Systematically derived thermodynamic properties for alkane oxidation

SN Elliott, KB Moore III, AV Copan, Y Georgievskii… - Combustion and …, 2023 - Elsevier
Key combustion properties, such as ignition delay time, show strong sensitivity to the
thermochemistry of the main species in the standard radical oxidation pathway at low …

Pilgrim: A thermal rate constant calculator and a chemical kinetics simulator

D Ferro-Costas, DG Truhlar… - Computer Physics …, 2020 - Elsevier
Pilgrim is a program written in Python and designed to use direct dynamics in the calculation
of thermal rate constants of chemical reactions by the variational transition state theory …

Understanding conformational entropy in small molecules

L Chan, GM Morris, GR Hutchison - Journal of Chemical Theory …, 2021 - ACS Publications
The calculation of the entropy of flexible molecules can be challenging, since the number of
possible conformers can grow exponentially with molecule size and many low-energy …

Understanding ring puckering in small molecules and cyclic peptides

L Chan, GR Hutchison, GM Morris - Journal of Chemical …, 2021 - ACS Publications
The geometry of a molecule plays a significant role in determining its physical and chemical
properties. Despite its importance, there are relatively few studies on ring puckering and …

Identification of torsional modes in complex molecules using redundant internal coordinates: The multistructural method with torsional anharmonicity with a coupled …

W Chen, P Zhang, DG Truhlar, J Zheng… - Journal of Chemical …, 2022 - ACS Publications
Identification of internal-rotation modes in the normal-mode analysis of complex molecules
is important for accurately describing the thermodynamic properties and kinetics of complex …

Ab initio kinetics for pyrolysis and combustion systems

SJ Klippenstein, C Cavallotti - Computer Aided Chemical Engineering, 2019 - Elsevier
Ab initio (AI) kinetics consists in the determination of rate coefficients using theoretical
methodologies that rely on first-principles calculations. In one of its most successful …