Deciphering molecular interactions by proximity labeling

W Qin, KF Cho, PE Cavanagh, AY Ting - Nature methods, 2021 - nature.com
Many biological processes are executed and regulated through the molecular interactions of
proteins and nucleic acids. Proximity labeling (PL) is a technology for tagging the …

Filling the void: proximity-based labeling of proteins in living cells

DI Kim, KJ Roux - Trends in cell biology, 2016 - cell.com
There are inherent limitations with traditional methods to study protein behavior or to
determine the constituency of proteins in discrete subcellular compartments. In response to …

Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei

K Billington, C Halliday, R Madden, P Dyer… - Nature …, 2023 - nature.com
Trypanosoma brucei is a model trypanosomatid, an important group of human, animal and
plant unicellular parasites. Understanding their complex cell architecture and life cycle is …

An improved smaller biotin ligase for BioID proximity labeling

DI Kim, SC Jensen, KA Noble, B Kc… - Molecular biology of …, 2016 - Am Soc Cell Biol
The BioID method uses a promiscuous biotin ligase to detect protein–protein associations
as well as proximate proteins in living cells. Here we report improvements to the BioID …

Proximity‐dependent labeling methods for proteomic profiling in living cells: An update

JA Bosch, CL Chen, N Perrimon - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Characterizing the proteome composition of organelles and subcellular regions of living
cells can facilitate the understanding of cellular organization as well as protein interactome …

Meet the neighbors: Mapping local protein interactomes by proximity‐dependent labeling with BioID

R Varnaitė, SA MacNeill - Proteomics, 2016 - Wiley Online Library
Proximity‐dependent biotin identification (BioID) is a recently developed method that allows
the identification of proteins in the close vicinity of a protein of interest in living cells. BioID …

[HTML][HTML] Mapping diversity in African trypanosomes using high resolution spatial proteomics

NM Moloney, K Barylyuk, E Tromer, OM Crook… - Nature …, 2023 - nature.com
African trypanosomes are dixenous eukaryotic parasites that impose a significant human
and veterinary disease burden on sub-Saharan Africa. Diversity between species and life …

Transcriptome, proteome and draft genome of Euglena gracilis

TGE Ebenezer, M Zoltner, A Burrell, A Nenarokova… - BMC biology, 2019 - Springer
Background Photosynthetic euglenids are major contributors to fresh water ecosystems.
Euglena gracilis in particular has noted metabolic flexibility, reflected by an ability to thrive in …

The flagellum attachment zone:'the cellular ruler'of trypanosome morphology

JD Sunter, K Gull - Trends in parasitology, 2016 - cell.com
A defining feature of Trypanosoma brucei cell shape is the lateral attachment of the
flagellum to the cell body, mediated by the flagellum attachment zone (FAZ). The FAZ is a …

[HTML][HTML] Cellular landmarks of Trypanosoma brucei and Leishmania mexicana

C Halliday, K Billington, Z Wang, R Madden… - Molecular and …, 2019 - Elsevier
The kinetoplastids Trypanosoma brucei and Leishmania mexicana are eukaryotes with a
highly structured cellular organisation that is reproduced with great fidelity in each …