High-throughput studies of biological systems are rapidly accumulating a wealth of'omics'-
scale data. Visualization is a key aspect of both the analysis and understanding of these …

Get an In-Depth Understanding of Graph Drawing Techniques, Algorithms, Software, and
Applications The Handbook of Graph Drawing and Visualization provides a broad, up-to …

Many algorithms for graph layout have been devised over the last 30 years spanning both
the graph drawing and information visualisation communities. This article first reviews the …

Force-directed algorithms have been developed over the last 50 years and used in many
application fields, including information visualisation, biological network visualisation …

Visualizing graphs has been studied extensively in the community of graph drawing and
information visualization over the years. In some applications, the user is required to interact …

This paper describes an evolutionary method for identifying a causal model from the
observed time-series data. We use a system of ordinary differential equations (ODEs) as the …

Background Biological networks are widely used to represent processes in biological
systems and to capture interactions and dependencies between biological entities. Their …

Representing models of cellular processes or pathways in a graphically rich form facilitates
interpretation of biological observations and generation of new hypotheses. Solving …

Big Data analytics is recognized as one of the major issues in our current information
society, and raises several challenges and opportunities in many fields, including economy …

Techniques for drawing graphs have proven successful in producing good layouts of
undirected graphs. When nodes must be labeled however, the problem of overlapping …