PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts

Q Huang, D Szklarczyk, M Wang, M Simonovic… - Molecular & Cellular …, 2023 - ASBMB
Abstract The" Protein Abundances Across Organisms" database (PaxDb) is an integrative
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …

Innovation in Cross-Linking Mass Spectrometry Workflows: Toward a Comprehensive, Flexible, and Customizable Data Analysis Platform

M Nie, H Li - Journal of the American Society for Mass …, 2023 - ACS Publications
Cross-linking mass spectrometry (XL-MS) is widely used in the analysis of protein structure
and protein–protein interactions (PPIs). Throughout the entire workflow, the utilization of …

Probing the structures of G protein-coupled receptors with mass spectrometry-based techniques

C Pan, J Li, S Yuan, W Shui - International Journal of Mass Spectrometry, 2023 - Elsevier
G protein-coupled receptors (GPCRs) are key molecules to regulate numerous physiological
processes in the human body, and represent one of the largest protein families as targets for …

Validated determination of NRG1 Ig-like domain structure by mass spectrometry coupled with computational modeling

NA Khaje, A Eletsky, SE Biehn, CK Mobley… - Communications …, 2022 - nature.com
High resolution hydroxyl radical protein footprinting (HR-HRPF) is a mass spectrometry-
based method that measures the solvent exposure of multiple amino acids in a single …

Breaking Barriers in Crosslinking Mass Spectrometry: Enhanced Throughput and Sensitivity with the Orbitrap Astral Mass Analyzer

F Mueller, K Stejskal, K Mechtler - bioRxiv, 2024 - biorxiv.org
The advancement of crosslinking mass spectrometry (CLMS) has significantly enhanced the
ability to study protein-protein interactions and complex biological systems. This study …

PaxDB 5.0: curated protein quantification data suggests adaptive proteome changes

Q Huang, D Szklarczyk, M Wang, M Simonovic… - bioRxiv, 2023 - biorxiv.org
Abstract The “Protein Abundances Across Organisms” database (PaxDB) is an integrative
meta-resource dedicated to protein abundance levels, in tissue-specific or whole-organism …

[图书][B] New technologies for cross-linking mass spectrometry

JP Mohr - 2022 - search.proquest.com
Cross-linking mass spectrometry is a rapidly evolving technique for obtaining structural
information about proteins and protein complexes in their near native state in a high …

Probing Protein Dynamics by Quantitative Crosslinking

KM Kammer - 2022 - kops.uni-konstanz.de
From reaction catalysis over complex macromolecular structures to signal processing:
protein complexes are at the center of virtually all processes within a cell. Deciphering their …