Biomedical question answering: a survey of approaches and challenges
Automatic Question Answering (QA) has been successfully applied in various domains such
as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables …
as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables …
A survey of current trends in computational drug repositioning
Computational drug repositioning or repurposing is a promising and efficient tool for
discovering new uses from existing drugs and holds the great potential for precision …
discovering new uses from existing drugs and holds the great potential for precision …
Promptsource: An integrated development environment and repository for natural language prompts
PromptSource is a system for creating, sharing, and using natural language prompts.
Prompts are functions that map an example from a dataset to a natural language input and …
Prompts are functions that map an example from a dataset to a natural language input and …
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Cellular life depends on a complex web of functional associations between biomolecules.
Among these associations, protein–protein interactions are particularly important due to their …
Among these associations, protein–protein interactions are particularly important due to their …
LitCovid: an open database of COVID-19 literature
Since the outbreak of the current pandemic in 2020, there has been a rapid growth of
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
Molecular and network-level mechanisms explaining individual differences in autism spectrum disorder
The mechanisms underlying phenotypic heterogeneity in autism spectrum disorder (ASD)
are not well understood. Using a large neuroimaging dataset, we identified three latent …
are not well understood. Using a large neuroimaging dataset, we identified three latent …
OMIM. org: leveraging knowledge across phenotype–gene relationships
JS Amberger, CA Bocchini, AF Scott… - Nucleic acids …, 2019 - academic.oup.com
Abstract For over 50 years Mendelian Inheritance in Man has chronicled the collective
knowledge of the field of medical genetics. It initially cataloged the known X-linked …
knowledge of the field of medical genetics. It initially cataloged the known X-linked …
PubTator central: automated concept annotation for biomedical full text articles
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …
service for viewing and retrieving bioconcept annotations in full text biomedical articles …
[HTML][HTML] BioCreative V CDR task corpus: a resource for chemical disease relation extraction
J Li, Y Sun, RJ Johnson, D Sciaky, CH Wei… - Database, 2016 - academic.oup.com
Community-run, formal evaluations and manually annotated text corpora are critically
important for advancing biomedical text-mining research. Recently in BioCreative V, a new …
important for advancing biomedical text-mining research. Recently in BioCreative V, a new …
Simultaneously self-attending to all mentions for full-abstract biological relation extraction
Most work in relation extraction forms a prediction by looking at a short span of text within a
single sentence containing a single entity pair mention. This approach often does not …
single sentence containing a single entity pair mention. This approach often does not …