[HTML][HTML] Automated and semi-automated enhancement, segmentation and tracing of cytoskeletal networks in microscopic images: A review

B Özdemir, R Reski - Computational and structural biotechnology journal, 2021 - Elsevier
Cytoskeletal filaments are structures of utmost importance to biological cells and organisms
due to their versatility and the significant functions they perform. These biopolymers are most …

Extracting microtubule networks from superresolution single-molecule localization microscopy data

Z Zhang, Y Nishimura… - Molecular biology of the …, 2017 - Am Soc Cell Biol
Microtubule filaments form ubiquitous networks that specify spatial organization in cells.
However, quantitative analysis of microtubule networks is hampered by their complex …

Quantitative mapping of keratin networks in 3D

R Windoffer, N Schwarz, S Yoon, T Piskova… - Elife, 2022 - elifesciences.org
Mechanobiology requires precise quantitative information on processes taking place in
specific 3D microenvironments. Connecting the abundance of microscopical, molecular …

Automated segmentation and quantification of actin stress fibres undergoing experimentally induced changes

H Rogge, N Artelt, N Endlich, K Endlich - Journal of microscopy, 2017 - Wiley Online Library
The actin cytoskeleton is a main component of cells and it is crucially involved in many
physiological processes, eg cell motility. Changes in the actin organization can be effected …

Active Canny: edge detection and recovery with open active contour models

M Baştan, SS Bukhari, T Breuel - IET Image Processing, 2017 - Wiley Online Library
The authors introduce an edge detection and recovery framework based on open active
contour models (snakelets) to mitigate the problem of noisy or broken edges produced by …

3D actin network centerline extraction with multiple active contours

T Xu, D Vavylonis, X Huang - Medical image analysis, 2014 - Elsevier
Fluorescence microscopy is frequently used to study two and three dimensional network
structures formed by cytoskeletal polymer fibers such as actin filaments and actin cables …

An integrated enhancement and reconstruction strategy for the quantitative extraction of actin stress fibers from fluorescence micrographs

Z Zhang, S Xia, P Kanchanawong - BMC bioinformatics, 2017 - Springer
Background The stress fibers are prominent organization of actin filaments that perform
important functions in cellular processes such as migration, polarization, and traction force …

Combining image restoration and traction force microscopy to study extracellular matrix-dependent keratin filament network plasticity

S Yoon, R Windoffer, AN Kozyrina, T Piskova… - Frontiers in Cell and …, 2022 - frontiersin.org
Keratin intermediate filaments are dynamic cytoskeletal components that are responsible for
tuning the mechanical properties of epithelial tissues. Although it is known that keratin …

Automatic extraction of actin networks in plants

J Hembrow, MJ Deeks… - PLOS Computational …, 2023 - journals.plos.org
The actin cytoskeleton is essential in eukaryotes, not least in the plant kingdom where it
plays key roles in cell expansion, cell division, environmental responses and pathogen …

Efficient multiple object tracking using mutually repulsive active membranes

Y Deng, P Coen, M Sun, JW Shaevitz - PloS one, 2013 - journals.plos.org
Studies of social and group behavior in interacting organisms require high-throughput
analysis of the motion of a large number of individual subjects. Computer vision techniques …