Plant organellar genomes: much done, much more to do

J Wang, S Kan, X Liao, J Zhou, LR Tembrock… - Trends in plant …, 2024 - cell.com
Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic
origin. In recent decades, advances in sequencing technologies have contributed to a …

Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology

R Bock - Annual Review of Plant Biology, 2015 - annualreviews.org
The small bacterial-type genome of the plastid (chloroplast) can be engineered by genetic
transformation, generating cells and plants with transgenic plastid genomes, also referred to …

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

A Kozik, BA Rowan, D Lavelle, L Berke… - PLoS …, 2019 - journals.plos.org
Plant mitochondrial genomes are usually assembled and displayed as circular maps based
on the widely-held view across the broad community of life scientists that circular genome …

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

DB Sloan, AJ Alverson, JP Chuckalovcak, M Wu… - PLoS …, 2012 - journals.plos.org
Genome size and complexity vary tremendously among eukaryotic species and their
organelles. Comparisons across deeply divergent eukaryotic lineages have suggested that …

Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

Y Liu, MG Johnson, CJ Cox, R Medina, N Devos… - Nature …, 2019 - nature.com
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …

The on‐again, off‐again relationship between mitochondrial genomes and species boundaries

DB Sloan, JC Havird, J Sharbrough - Molecular ecology, 2017 - Wiley Online Library
The study of reproductive isolation and species barriers frequently focuses on mitochondrial
genomes and has produced two alternative and almost diametrically opposed narratives. On …

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

ML Weng, JC Blazier, M Govindu… - Molecular biology and …, 2014 - academic.oup.com
Geraniaceae plastid genomes are highly rearranged, and each of the four genera already
sequenced in the family has a distinct genome organization. This study reports plastid …

Why are most organelle genomes transmitted maternally?

S Greiner, J Sobanski, R Bock - Bioessays, 2015 - Wiley Online Library
Why the DNA‐containing organelles, chloroplasts, and mitochondria, are inherited
maternally is a long standing and unsolved question. However, recent years have seen a …

Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms

JH Ran, TT Shen, MM Wang… - Proceedings of the …, 2018 - royalsocietypublishing.org
After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has
not been resolved, and the phylogenetic placement of Gnetales remains one of the most …

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

DW Rice, AJ Alverson, AO Richardson, GJ Young… - Science, 2013 - science.org
We report the complete mitochondrial genome sequence of the flowering plant Amborella
trichopoda. This enormous, 3.9-megabase genome contains six genome equivalents of …