Omics of antimicrobials and antimicrobial resistance

VM Chernov, OA Chernova… - Expert opinion on …, 2019 - Taylor & Francis
Introduction: The development of new antimicrobials has become an urgent priority because
of a global challenge emerging from the rise of antimicrobial resistant pathogens. Areas …

Alveolar regeneration in COVID-19 patients: a network perspective

SK Gupta, M Srivastava, R Minocha, A Akash… - International Journal of …, 2021 - mdpi.com
A viral infection involves entry and replication of viral nucleic acid in a host organism,
subsequently leading to biochemical and structural alterations in the host cell. In the case of …

Geptop 2.0: an updated, more precise, and faster Geptop server for identification of prokaryotic essential genes

QF Wen, S Liu, C Dong, HX Guo, YZ Gao… - Frontiers in …, 2019 - frontiersin.org
Geptop has performed effectively in the identification of prokaryotic essential genes since its
first release in 2013. It estimates gene essentiality for prokaryotes based on orthology and …

Comparative subtractive proteomics based ranking for antibiotic targets against the dirtiest superbug: Acinetobacter baumannii

S Ahmad, S Raza, R Uddin, SS Azam - Journal of Molecular Graphics and …, 2018 - Elsevier
Multidrug-resistant Acinetobacter baumannii is indeed to be the most successful nosocomial
pathogen responsible for myriad infections in modern health care system. Computational …

Study of anticancer and antibacterial activities of Foeniculum vulgare, Justicia adhatoda and Urtica dioica as natural curatives

R Batool, H Salahuddin, T Mahmood… - Cellular and Molecular …, 2017 - cellmolbiol.org
High-throughput technologies, such as synthetic biology and genomics have paved new
paths for discovery and utility of medicinally beneficial plants. Bioactive molecules isolated …

Identification of antifungal targets based on computer modeling

E Bencurova, SK Gupta, E Sarukhanyan, T Dandekar - Journal of Fungi, 2018 - mdpi.com
Aspergillus fumigatus is a saprophytic, cosmopolitan fungus that attacks patients with a
weak immune system. A rational solution against fungal infection aims to manipulate fungal …

GuiltyTargets: prioritization of novel therapeutic targets with network representation learning

Ö Muslu, CT Hoyt, M Lacerda… - IEEE/ACM …, 2020 - ieeexplore.ieee.org
The majority of clinical trials fail due to low efficacy of investigated drugs, often resulting from
a poor choice of target protein. Existing computational approaches aim to support target …

[PDF][PDF] Pathogen and host-pathogen protein interactions provide a key to identify novel drug targets

SK Gupta, Ö Osmanoglu, M Srivastava… - Reference Module in …, 2020 - academia.edu
Bacterial pathogens are a major cause of life-threatening diseases around the globe despite
all technological advances. Infections caused by bacterial pathogens are the most common …

Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs

SK Gupta, M Srivastava, Ö Osmanoglu, T Dandekar - Scientific Reports, 2020 - nature.com
Apart from some model organisms, the interactome of most organisms is largely unidentified.
High-throughput experimental techniques to determine protein-protein interactions (PPIs) …

Pan-genomic analysis of the species Salmonella enterica: identification of core essential and putative essential genes

Y Chand, MA Alam, S Singh - Gene Reports, 2020 - Elsevier
Background Essential genes are defined as the minimal gene set required to support
bacterial life. In order to develop new antimicrobials to treat multidrug-resistant pathogens …