Structural diversity among plastid genomes of land plants

JP Mower, TL Vickrey - Advances in botanical research, 2018 - Elsevier
The plastome of land plants is often considered to be highly conserved in sequence,
structure, and content. This is particularly true for nonvascular land plants, for which few …

The interrelationships of land plants and the nature of the ancestral embryophyte

MN Puttick, JL Morris, TA Williams, CJ Cox, D Edwards… - Current Biology, 2018 - cell.com
The evolutionary emergence of land plant body plans transformed the planet. However, our
understanding of this formative episode is mired in the uncertainty associated with the …

Land plant molecular phylogenetics: a review with comments on evaluating incongruence among phylogenies

CJ Cox - Critical Reviews in Plant Sciences, 2018 - Taylor & Francis
Land plants evolved from freshwater charophyte algal ancestors during a single transition to
the terrestrial environment. The six major lineages of land plants are divided into two groups …

Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny

J Clark, O Hidalgo, J Pellicer, H Liu… - New …, 2016 - Wiley Online Library
The genome evolution of ferns has been considered to be relatively static compared with
angiosperms. In this study, we analyse genome size data and chromosome numbers in a …

A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families

X Qi, LY Kuo, C Guo, H Li, Z Li, JI Qi, L Wang… - Molecular Phylogenetics …, 2018 - Elsevier
Ferns account for 80% of nonflowering vascular plant species and are the sister lineage of
seed plants. Recent molecular phylogenetics have greatly advanced understanding of fern …

Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted …

HT Kim, JS Kim, MJ Moore, KM Neubig, NH Williams… - PLoS …, 2015 - journals.plos.org
Earlier research has revealed that the ndh loci have been pseudogenized, truncated, or
deleted from most orchid plastomes sequenced to date, including in all available plastomes …

Plastid phylogenomics resolve deep relationships among eupolypod II ferns with rapid radiation and rate heterogeneity

R Wei, YH Yan, AJ Harris, JS Kang… - Genome Biology and …, 2017 - academic.oup.com
The eupolypods II ferns represent a classic case of evolutionary radiation and,
simultaneously, exhibit high substitution rate heterogeneity. These factors have been …

Organellomic data sets confirm a cryptic consensus on (unrooted) land‐plant relationships and provide new insights into bryophyte molecular evolution

D Bell, Q Lin, WK Gerelle, S Joya… - American Journal of …, 2020 - Wiley Online Library
Premise Phylogenetic trees of bryophytes provide important evolutionary context for land
plants. However, published inferences of overall embryophyte relationships vary …

Structural variation of plastomes provides key insight into the deep phylogeny of ferns

XY Du, LY Kuo, ZY Zuo, DZ Li, JM Lu - Frontiers in Plant Science, 2022 - frontiersin.org
Structural variation of plastid genomes (plastomes), particularly large inversions and gene
losses, can provide key evidence for the deep phylogeny of plants. In this study, we …

Insights into chloroplast genome evolution across Opuntioideae (Cactaceae) reveals robust yet sometimes conflicting phylogenetic topologies

M Köhler, M Reginato, TT Souza-Chies… - Frontiers in Plant …, 2020 - frontiersin.org
Chloroplast genomes (plastomes) are frequently treated as highly conserved among land
plants. However, many lineages of vascular plants have experienced extensive structural …