High throughput sequencing for plant virus detection and discovery

DEV Villamor, T Ho, M Al Rwahnih, RR Martin… - …, 2019 - Am Phytopath Society
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …

Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

Are RNA viruses candidate agents for the next global pandemic? A review

R Carrasco-Hernandez, R Jácome, Y López Vidal… - ILAR …, 2017 - academic.oup.com
Pathogenic RNA viruses are potentially the most important group involved in zoonotic
disease transmission, and they represent a challenge for global disease control. Their …

Methods in virus diagnostics: from ELISA to next generation sequencing

N Boonham, J Kreuze, S Winter, R van der Vlugt… - Virus research, 2014 - Elsevier
Despite the seemingly continuous development of newer and ever more elaborate methods
for detecting and identifying viruses, very few of these new methods get adopted for routine …

When viruses play team sports: Mixed infections in plants

AB Moreno, JJ López-Moya - Phytopathology, 2020 - Am Phytopath Society
The pathological importance of mixed viral infections in plants might be underestimated
except for a few well-characterized synergistic combinations in certain crops. Considering …

Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

Historical perspective, development and applications of next-generation sequencing in plant virology

M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …

Illuminating an ecological blackbox: using high throughput sequencing to characterize the plant virome across scales

F Maclot, T Candresse, D Filloux… - Frontiers in …, 2020 - frontiersin.org
The ecology of plant viruses began to be explored at the end of the 19th century. Since then,
major advances have revealed mechanisms of virus-host-vector interactions in various …

Next generation sequencing for detection and discovery of plant viruses and viroids: comparison of two approaches

A Pecman, D Kutnjak, I Gutiérrez-Aguirre… - Frontiers in …, 2017 - frontiersin.org
Next generation sequencing (NGS) technologies are becoming routinely employed in
different fields of virus research. Different sequencing platforms and sample preparation …

Grapevine leafroll-associated virus 3

HJ Maree, RPP Almeida, R Bester, KM Chooi… - Frontiers in …, 2013 - frontiersin.org
Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases
affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult …