Metabolic engineering has allowed the production of a diverse number of valuable chemicals using microbial organisms. Many biological challenges for improving bio …
F Delavat, R Miyazaki, N Carraro… - FEMS microbiology …, 2017 - academic.oup.com
Integrative and conjugative elements (ICEs) are widespread mobile DNA that transmit both vertically, in a host-integrated state, and horizontally, through excision and transfer to new …
INTRODUCTION Modern computing is based on sequential logic, in which the state of a circuit depends both on the present inputs as well as the input history (memory) …
VA Rhodius, TH Segall‐Shapiro, BD Sharon… - Molecular systems …, 2013 - embopress.org
Cells react to their environment through gene regulatory networks. Network integrity requires minimization of undesired crosstalk between their biomolecules. Similar constraints also …
M Mauri, S Klumpp - PLoS computational biology, 2014 - journals.plos.org
Sigma factors control global switches of the genetic expression program in bacteria. Different sigma factors compete for binding to a limited pool of RNA polymerase (RNAP) …
Starving Bacillus subtilis cells execute a gene expression program resulting in the formation of stress-resistant spores. Sporulation master regulator, Spo0A, is activated by a …
RJ Butcher, JJ Tabor - … of the National Academy of Sciences, 2022 - National Acad Sciences
Bacteria utilize two-component system (TCS) signal transduction pathways to sense and adapt to changing environments. In a typical TCS, a stimulus induces a sensor histidine …
Clostridioides (formerly Clostridium) difficile produces two major toxins, TcdA and TcdB, upon entry into stationary phase. Transcription of tcdA and tcdB requires the specialized …
S Nagata, M Kikuchi - PLoS computational biology, 2020 - journals.plos.org
Gene regulatory networks (GRNs) are complex systems in which many genes regulate mutually to adapt the cell state to environmental conditions. In addition to function, the GRNs …