Flexible statistical inference for mechanistic models of neural dynamics

JM Lueckmann, PJ Goncalves… - Advances in neural …, 2017 - proceedings.neurips.cc
Mechanistic models of single-neuron dynamics have been extensively studied in
computational neuroscience. However, identifying which models can quantitatively …

[HTML][HTML] Active dendrites and local field potentials: biophysical mechanisms and computational explorations

M Sinha, R Narayanan - Neuroscience, 2022 - Elsevier
Neurons and glial cells are endowed with membranes that express a rich repertoire of ion
channels, transporters, and receptors. The constant flux of ions across the neuronal and glial …

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

S Dura-Bernal, BA Suter, P Gleeson, M Cantarelli… - Elife, 2019 - elifesciences.org
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …

Systematic generation of biophysically detailed models for diverse cortical neuron types

NW Gouwens, J Berg, D Feng, SA Sorensen… - Nature …, 2018 - nature.com
The cellular components of mammalian neocortical circuits are diverse, and capturing this
diversity in computational models is challenging. Here we report an approach for generating …

BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience

W Van Geit, M Gevaert, G Chindemi… - Frontiers in …, 2016 - frontiersin.org
At many scales in neuroscience, appropriate mathematical models take the form of complex
dynamical systems. Parameterizing such models to conform to the multitude of available …

Uncertainpy: a python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience

S Tennøe, G Halnes, GT Einevoll - Frontiers in neuroinformatics, 2018 - frontiersin.org
Computational models in neuroscience typically contain many parameters that are poorly
constrained by experimental data. Uncertainty quantification and sensitivity analysis provide …

Global and multiplexed dendritic computations under in vivo-like conditions

BB Ujfalussy, JK Makara, M Lengyel, T Branco - Neuron, 2018 - cell.com
Dendrites integrate inputs nonlinearly, but it is unclear how these nonlinearities contribute to
the overall input-output transformation of single neurons. We developed statistically …

Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3

A Ecker, B Bagi, E Vértes, O Steinbach-Németh… - Elife, 2022 - elifesciences.org
Hippocampal place cells are activated sequentially as an animal explores its environment.
These activity sequences are internally recreated ('replayed'), either in the same or reversed …

On the accuracy and computational cost of spiking neuron implementation

S Valadez-Godínez, H Sossa, R Santiago-Montero - Neural Networks, 2020 - Elsevier
Since more than a decade ago, three statements about spiking neuron (SN)
implementations have been widely accepted: 1) Hodgkin and Huxley (HH) model is …

Ion‐channel degeneracy and heterogeneities in the emergence of complex spike bursts in CA3 pyramidal neurons

R Roy, R Narayanan - The Journal of physiology, 2023 - Wiley Online Library
Complex spike bursting (CSB) is a characteristic electrophysiological signature exhibited by
several neuronal subtypes and has been implicated in neural plasticity, learning, perception …