Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes: an approach with support vector machine based on discrete wavelet …

JD Qiu, JH Huang, SP Shi… - Protein and peptide …, 2010 - ingentaconnect.com
The early determination of family for a newly found enzyme molecule becomes important
because it is directly related to the detail information about which specific target it acts on, as …

Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM

P Mundra, M Kumar, KK Kumar, VK Jayaraman… - Pattern Recognition …, 2007 - Elsevier
Identification of Nuclear protein localization assumes significance as it can provide in depth
insight for genome regulation and function annotation of novel proteins. A multiclass SVM …

[HTML][HTML] Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction

Y Huang, SY Chen, F Deng - Computational and structural biotechnology …, 2016 - Elsevier
In silico analysis of DNA sequences is an important area of computational biology in the post-
genomic era. Over the past two decades, computational approaches for ab initio prediction …

Genomic signatures in microbes—properties and applications

J Bohlin - The Scientific World Journal, 2011 - Wiley Online Library
The ratio of genomic oligonucleotide frequencies relative to the mean genomic AT/GC
content has been shown to be similar for closely related species and, therefore, said to …

Optimization of Discrete Wavelet transform feature representation and hierarchical classification of G-Protein coupled receptor using Firefly Algorithm and particle …

NAM Kamal, AA Bakar, S Zainudin - Applied Sciences, 2022 - mdpi.com
Featured Application This article belongs to the Section Computing and Artificial
Intelligence. Abstract Ineffective protein feature representation poses problems in protein …

Investigations of oligonucleotide usage variance within and between prokaryotes

J Bohlin, E Skjerve, DW Ussery - PLoS computational biology, 2008 - journals.plos.org
Oligonucleotide usage in archaeal and bacterial genomes can be linked to a number of
properties, including codon usage (trinucleotides), DNA base-stacking energy …

Investigation on series of length of coding and non-coding DNA sequences of bacteria using multifractal detrended cross-correlation analysis

C Stan, MT Cristescu, BI Luiza, CP Cristescu - Journal of Theoretical …, 2013 - Elsevier
In the framework of multifractal detrended cross-correlation analysis, we investigate
characteristics of series of length of coding and non-coding DNA sequences of some …

[图书][B] Methods for computational gene prediction

WH Majoros, S Salzberg - 2007 - library.wur.nl
Inferring the precise locations and splicing patterns of genes in DNA is a difficult but
important task, with broad applications to biomedicine. The mathematical and statistical …

Examination of genome homogeneity in prokaryotes using genomic signatures

J Bohlin, E Skjerve - PLoS One, 2009 - journals.plos.org
Background DNA word frequencies, normalized for genomic AT content, are remarkably
stable within prokaryotic genomes and are therefore said to reflect a “genomic signature.” …

Multifractal topography: a tool to measure tectonic complexity in the Zagros Mountain range

AP Kolahi-Azar, S Golriz - Mathematical Geosciences, 2018 - Springer
In this research, it is tried to measure tectonic complexity from the multifractal attributes of the
Earth's surface topography in the Zagros Mountain range. For this aim the multifractal …