Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases

X Yuan, J Wang, B Dai, Y Sun, K Zhang… - Briefings in …, 2022 - academic.oup.com
It's challenging work to identify disease-causing genes from the next-generation sequencing
(NGS) data of patients with Mendelian disorders. To improve this situation, researchers have …

[HTML][HTML] Visual Impairment in Women with Turner Syndrome—A 49-Year Literature Review

E Soszka-Przepiera, M Krzyścin… - Journal of Clinical …, 2024 - mdpi.com
Aim: Among the severe organ complications occurring in patients with Turner syndrome
(TS), ophthalmic dysmorphia and visual impairment are usually marginalized. There are …

Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders

F Chen, P Ahimaz, QM Nguyen, R Lewis… - npj Digital …, 2024 - nature.com
Patients with rare diseases often experience prolonged diagnostic delays. Ordering
appropriate genetic tests is crucial yet challenging, especially for general pediatricians …

A Systematic Review of the Application of Computational Technology in Microtia

J Zhou, R Cui, L Lin - Journal of Craniofacial Surgery, 2024 - journals.lww.com
Microtia is a congenital and morphological anomaly of one or both ears, which results from a
confluence of genetic and external environmental factors. Up to now, extensive research has …

[HTML][HTML] Klarigi: Characteristic explanations for semantic biomedical data

K Slater, JA Williams, PN Schofield, S Russell… - Computers in Biology …, 2023 - Elsevier
Annotation of biomedical entities with ontology classes provides for formal semantic analysis
and mobilisation of background knowledge in determining their relationships. To date …

Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms

ALM Tan, RS Gonçalves, W Yuan, GA Brat… - JAMIA …, 2024 - academic.oup.com
Objective Integrating electronic health record (EHR) data with other resources is essential in
rare disease research due to low disease prevalence. Such integration is dependent on the …

Termviewer–a web application for streamlined human phenotype ontology (hpo) tagging and document annotation

A Nixon, L Fang, JM Havrilla… - Chemistry & Biodiversity, 2022 - Wiley Online Library
Clinical notes from electronic health records (EHRs) contain a large amount of clinical
phenotype data on patients that can provide insights into the phenotypic presentation of …

Natural language processing and expert follow-up establishes tachycardia association with CDKL5 deficiency disorder

A Ivaniuk, CM Boßelmann, X Zhang, MS John… - Genetics in Medicine …, 2024 - Elsevier
Purpose CDKL5 deficiency disorder (CDD) is a developmental and epileptic
encephalopathy with multisystemic comorbidities. Cardiovascular involvement in CDD was …

Expansion of clinical genetic testing since the completion of the human genome project

L Bastarache, RJ Tinker, B Schuler, L Richter… - medRxiv, 2024 - medrxiv.org
The sequencing of the first human genome led to expectations of the widespread use of
genetics in medicine. However, assessing the true impact of genetic testing on clinical …

Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms

ALM Tan, RS Gonçalves, W Yuan, GA Brat… - arXiv preprint arXiv …, 2024 - arxiv.org
Objective: Integrating EHR data with other resources is essential in rare disease research
due to low disease prevalence. Such integration is dependent on the alignment of …