Multi-omics analysis to examine microbiota, host gene expression and metabolites in the intestine of black tiger shrimp (Penaeus monodon) with different growth …

T Uengwetwanit, U Uawisetwathana… - PeerJ, 2020 - peerj.com
Understanding the correlation between shrimp growth and their intestinal bacteria would be
necessary to optimize animal's growth performance. Here, we compared the bacterial …

Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta, Gracilariales)

N Nakamura‐Gouvea, C Alves‐Lima… - Journal of …, 2022 - Wiley Online Library
Gracilariales is a clade of florideophycean red macroalgae known for being the main source
of agar. We present a de novo genome assembly and annotation of Gracilaria domingensis …

De novo transcriptome analyses provide insights into opsin-based photoreception in the lanternshark Etmopterus spinax

J Delroisse, L Duchatelet, P Flammang, J Mallefet - PLoS One, 2018 - journals.plos.org
The velvet belly lanternshark (Etmopterus spinax) is a small deep-sea shark commonly
found in the Eastern Atlantic and the Mediterranean Sea. This bioluminescent species is …

Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyonMagnaporthe oryzae Pathosystems

S Zanini, E Šečić, T Busche, M Galli, Y Zheng… - International journal of …, 2021 - mdpi.com
The hemibiotrophic fungus Magnaporthe oryzae (Mo) is the causative agent of rice blast and
can infect aerial and root tissues of a variety of Poaceae, including the model Brachypodium …

A deep learning ensemble for function prediction of hypothetical proteins from pathogenic bacterial species

S Mishra, YP Rastogi, S Jabin, P Kaur, M Amir… - … biology and chemistry, 2019 - Elsevier
Protein function prediction is a crucial task in the post-genomics era due to their diverse
irreplaceable roles in a biological system. Traditional methods involved cost-intensive and …

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

P Drozdova, L Rivarola-Duarte, D Bedulina… - BMC genomics, 2019 - Springer
Abstract Background Lake Baikal is one of the oldest freshwater lakes and has constituted a
stable environment for millions of years, in stark contrast to small, transient bodies of water in …

Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus

D Bedulina, P Drozdova, A Gurkov… - Science of the Total …, 2021 - Elsevier
Abstract The ancient Lake Baikal is the largest source of liquid freshwater on Earth and
home to a unique fauna. Several hundred mostly cold-adapted endemic amphipod species …

[PDF][PDF] Retracted: Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants

A Ghelfi, K Shirasawa, H Hirakawa, S Isobe - Bioinformatics, 2019 - academic.oup.com
Summary Hayai-Annotation Plants is a browser-based interface for an ultra-fast and
accurate functional gene annotation system for plant species using R. The pipeline …

De novo transcriptome of Gymnema sylvestre identified putative lncRNA and genes regulating terpenoid biosynthesis pathway

G Ayachit, I Shaikh, P Sharma, B Jani, L Shukla… - Scientific Reports, 2019 - nature.com
Gymnema sylvestre is a highly valuable medicinal plant in traditional Indian system of
medicine and used in many polyherbal formulations especially in treating diabetes …

[HTML][HTML] A molecular study of Italian ryegrass grown on Martian regolith simulant

R Berni, CC Leclercq, P Roux, JF Hausman… - Science of the Total …, 2023 - Elsevier
In the last decade, the exploration of deep space has become the objective of the national
space programs of many countries. The International Space Exploration Coordination Group …