Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs (Coregonus sp.) with long and short reads

C Mérot, KSR Stenløkk, C Venney, M Laporte… - Molecular …, 2023 - Wiley Online Library
Nascent pairs of ecologically differentiated species offer an opportunity to get a better
glimpse at the genetic architecture of speciation. Of particular interest is our recent ability to …

Computational biology and artificial intelligence in mRNA vaccine design for cancer immunotherapy

S Imani, X Li, K Chen, M Maghsoudloo… - Frontiers in Cellular …, 2025 - frontiersin.org
Messenger RNA (mRNA) vaccines offer an adaptable and scalable platform for cancer
immunotherapy, requiring optimal design to elicit a robust and targeted immune response …

Genome-wide association studies reveal novel QTLs, QTL-by-environment interactions and their candidate genes for tocopherol content in soybean seed

K Yu, H Miao, H Liu, J Zhou, M Sui, Y Zhan… - Frontiers in Plant …, 2022 - frontiersin.org
Genome-wide association studies (GWAS) is an efficient method to detect quantitative trait
locus (QTL), and has dissected many complex traits in soybean [Glycine max (L.) Merr.] …

[HTML][HTML] Structural Variations in Oil Crops: Types, and Roles on Domestication and Breeding

X Cui, M Yao, M Xie, M Hu, S Liu, L Liu, C Tong - Oil Crop Science, 2024 - Elsevier
Structural variations (SVs), a newly discoveredgenetic variation, have gained increasing
recognition for their importance, yet much about them remains unknown. With the …

Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations

L Lecomte, M Árnyasi, AL Ferchaud… - Evolutionary …, 2024 - Wiley Online Library
Genomic structural variants (SVs) are now recognized as an integral component of
intraspecific polymorphism and are known to contribute to evolutionary processes in various …

Identification of QTNs, QEIs interactions and genes for isoflavones in soybean seeds

Z Yang, X Wu, Y Yang, Y Qu, J Xu, D Wu, D Li… - Industrial Crops and …, 2023 - Elsevier
Isoflavones are important components of soybean seeds, and the contents affect the
nutritional value of soybean products. To further reveal and improve the regulation …

[HTML][HTML] Making sense of complexity: Advances in bioinformatics for plant biology

K Emelianova, DM Riaño‐Pachón… - Applications in Plant …, 2023 - ncbi.nlm.nih.gov
Coined by Dutch theoretical biologists in the 1970s, the term bioinformatics originally
denoted a broad concept relating to the study of information processing in biological …

Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits

J Berthelier, B Saint-Jean, N Casse, G Bougaran… - Plos one, 2023 - journals.plos.org
Microalgal domestication is an expanding research field that aims to multiply and accelerate
the potential of microalgae for various biotechnological purposes. We investigated the …

Benchmarking Oxford Nanopore read alignment‐based insertion and deletion detection in crop plant genomes

G Yildiz, SF Zanini, NP Afsharyan… - The Plant …, 2023 - Wiley Online Library
Structural variations (SVs) are larger polymorphisms (> 50 bp in length), which consist of
insertions, deletions, inversions, duplications, and translocations. They can have a strong …

Online data resource for exploring transposon insertion polymorphisms in public soybean germplasm accessions

Z Yin, Q Yang, D Shen, J Liu, W Huang… - Plant …, 2023 - academic.oup.com
Abstract Soybean (Glycine max L. Merrill) is one of the most important economical crops. A
large number of whole-genome resequencing datasets have been generated and are …