[HTML][HTML] Structural analysis of macromolecular assemblies by electron microscopy

EV Orlova, HR Saibil - Chemical reviews, 2011 - ACS Publications
To fully understand biological processes from the metabolism of a bacterium to the operation
of a human brain, it is necessary to know the three-dimensional (3D) spatial arrangement …

Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging

FKM Schur - Current opinion in structural biology, 2019 - Elsevier
Highlights•Cryo-ET and subtomogram averaging allow visualizing macromolecular
complexes in close to physiological conditions.•This offers a significant potential for in situ …

[HTML][HTML] AreTomo: An integrated software package for automated marker-free, motion-corrected cryo-electron tomographic alignment and reconstruction

S Zheng, G Wolff, G Greenan, Z Chen, FGA Faas… - Journal of Structural …, 2022 - Elsevier
AreTomo, an abbreviation for Alignment and Reconstruction for Electron Tomography, is a
GPU accelerated software package that fully automates motion-corrected marker-free …

Automated tilt series alignment and tomographic reconstruction in IMOD

DN Mastronarde, SR Held - Journal of structural biology, 2017 - Elsevier
Automated tomographic reconstruction is now possible in the IMOD software package,
including the merging of tomograms taken around two orthogonal axes. Several …

Structure of RNA polymerase I transcribing ribosomal DNA genes

S Neyer, M Kunz, C Geiss, M Hantsche, VV Hodirnau… - Nature, 2016 - nature.com
Abstract RNA polymerase I (Pol I) is a highly processive enzyme that transcribes ribosomal
DNA (rDNA) and regulates growth of eukaryotic cells,,,. Crystal structures of free Pol I from …

Automated quantification of vacuole fusion and lipophagy in Saccharomyces cerevisiae from fluorescence and cryo-soft X-ray microscopy data using deep learning

JM Egebjerg, M Szomek, K Thaysen, AD Juhl… - Autophagy, 2024 - Taylor & Francis
During starvation in the yeast Saccharomyces cerevisiae vacuolar vesicles fuse and lipid
droplets (LDs) can become internalized into the vacuole in an autophagic process named …

Rapid alignment of nanotomography data using joint iterative reconstruction and reprojection

D Gürsoy, YP Hong, K He, K Hujsak, S Yoo, S Chen… - Scientific reports, 2017 - nature.com
As x-ray and electron tomography is pushed further into the nanoscale, the limitations of
rotation stages become more apparent, leading to challenges in the alignment of the …

Computational methods for electron tomography

JJ Fernandez - Micron, 2012 - Elsevier
Electron tomography (ET) has emerged as a powerful technique to address fundamental
questions in molecular and cellular biology. It makes possible visualization of the molecular …

Marker-free image registration of electron tomography tilt-series

COS Sorzano, C Messaoudi, M Eibauer… - BMC …, 2009 - Springer
Background Tilt series are commonly used in electron tomography as a means of collecting
three-dimensional information from two-dimensional projections. A common problem …

Cryo-electron tomography in biology and medicine

RI Koning, AJ Koster - Annals of Anatomy-Anatomischer Anzeiger, 2009 - Elsevier
During the last six decades electron microscopy (EM) has been essential to ultra-structural
studies of the cell to understand the fundamentals of cellular morphology and processes …