ivga: A fast force-directed method for interactive visualization of complex networks

W Dzwinel, R Wcisło, W Czech - Journal of Computational Science, 2017 - Elsevier
Complex networks play a very important role in various fields of science as data structures,
which aggregate information about mutual relationships between numerous objects. The …

A one hour trip in the world of graphs, looking at the papers of the last ten years

M Vento - … Workshop on Graph-Based Representations in Pattern …, 2013 - Springer
Motivations of the Trip The use of a graph-based pattern representation induces the need to
formulate the main operations required in Pattern Recognition in terms of operations on …

Molecular Topological Profile (MOLTOP)--Simple and Strong Baseline for Molecular Graph Classification

J Adamczyk, W Czech - arXiv preprint arXiv:2407.12136, 2024 - arxiv.org
We revisit the effectiveness of topological descriptors for molecular graph classification and
design a simple, yet strong baseline. We demonstrate that a simple approach to feature …

A method of analysis and visualization of structured datasets based on centrality information

W Czech, R Łazarz - International Conference on Artificial Intelligence and …, 2016 - Springer
We present a new method of quantitative graph analysis and visualization based on vertex
centrality measures and distance matrices. After generating distance k-graphs and collecting …

Relation order histograms as a network embedding tool

R Łazarz, M Idzik - Computational Science–ICCS 2021: 21st International …, 2021 - Springer
In this work, we introduce a novel graph embedding technique called NERO (Network
Embedding based on Relation Order histograms). Its performance is assessed using a …

Strengthening structural baselines for graph classification using Local Topological Profile

J Adamczyk, W Czech - International Conference on Computational …, 2023 - Springer
We present the analysis of the topological graph descriptor Local Degree Profile (LDP),
which forms a widely used structural baseline for graph classification. Our study focuses on …

Distributed computing of distance‐based graph invariants for analysis and visualization of complex networks

W Czech, W Mielczarek… - … and Computation: Practice …, 2017 - Wiley Online Library
We present a new framework for analysis and visualization of complex networks based on
structural information retrieved from their distance k‐graphs and B‐matrices. The …

Interactive visualization tool for planning cancer treatment

R Wcisło, W Dzwinel, P Gosztyla, DA Yuen… - GPU Solutions to Multi …, 2013 - Springer
We discuss the components and main requirements of the interactive visualization and
simulation system intended for better understanding the dynamics of solid tumor …

Asymptotic Spectral Distributions of Distance -Graphs of Cartesian Product Graphs

Y Hibino, HH Lee, N Obata - arXiv preprint arXiv:1304.1236, 2013 - arxiv.org
Let $ G $ be a finite connected graph on two or more vertices and $ G^{[N, k]} $ the distance
$ k $-graph of the $ N $-fold Cartesian power of $ G $. For a fixed $ k\ge1 $, we obtain …

Sequence and structure space model of protein divergence driven by point mutations

T Arodź, PM Płonka - Journal of theoretical biology, 2013 - Elsevier
New folds of protein structures emerge in evolution as a result of insertions, deletions or
shuffling of fragments of underlying gene sequences, and from aggregated effects of point …