Evolution of selective-sequencing approaches for virus discovery and virome analysis
A Kumar, S Murthy, A Kapoor - Virus research, 2017 - Elsevier
Recent advances in sequencing technologies have transformed the field of virus discovery
and virome analysis. Once mostly confined to the traditional Sanger sequencing based …
and virome analysis. Once mostly confined to the traditional Sanger sequencing based …
Rotavirus strain diversity in Eastern and Southern African countries before and after vaccine introduction
LM Seheri, NB Magagula, I Peenze, K Rakau… - Vaccine, 2018 - Elsevier
Abstract Background The African Rotavirus Surveillance Network has been detecting and
documenting rotavirus genotypes in the African sub-continent since 1998 in anticipation of …
documenting rotavirus genotypes in the African sub-continent since 1998 in anticipation of …
Molecular characterization of human group A rotavirus genotypes circulating in Rawalpindi, Islamabad, Pakistan during 2015-2016
Group A rotaviruses (RVA) are one of the major causes of acute gastroenteritis (AGE) in
young children worldwide. Owing to lack of proper surveillance programs and health …
young children worldwide. Owing to lack of proper surveillance programs and health …
Whole genome analysis of human rotaviruses reveals single gene reassortant rotavirus strains in Zambia
Rotarix® vaccine was implemented nationwide in Zambia in 2013. In this study, four unusual
strains collected in the post-vaccine period were subjected to whole genome sequencing …
strains collected in the post-vaccine period were subjected to whole genome sequencing …
Multiple introductions and antigenic mismatch with vaccines may contribute to increased predominance of G12P [8] rotaviruses in the United States
KM Ogden, Y Tan, A Akopov, LS Stewart… - Journal of …, 2019 - Am Soc Microbiol
Rotavirus is the leading global cause of diarrheal mortality for unvaccinated children under 5
years of age. The outer capsid of rotavirus virions consists of VP7 and VP4 proteins, which …
years of age. The outer capsid of rotavirus virions consists of VP7 and VP4 proteins, which …
Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan …
Group A rotaviruses (RVA) are among the main global causes of severe diarrhea in children
under the age of 5 years. Strain diversity, mixed infections and untypeable RVA strains are …
under the age of 5 years. Strain diversity, mixed infections and untypeable RVA strains are …
Changes in the distribution of lineage constellations of G2P [4] Rotavirus A strains detected in Japan over 32 years (1980–2011)
YH Doan, T Nakagomi, CA Agbemabiese… - Infection, Genetics and …, 2015 - Elsevier
Rotavirus A (RVA) is a leading cause of acute gastroenteritis in young children worldwide.
Most human RVA strains are classified into three major genotype constellations: Wa-like, DS …
Most human RVA strains are classified into three major genotype constellations: Wa-like, DS …
Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P [6] strains circulating in Africa
Rotavirus A (RVA) exhibits a wide genotype diversity globally. Little is known about the
genetic composition of genotype P [6] from Africa. This study investigated possible …
genetic composition of genotype P [6] from Africa. This study investigated possible …
Rotavirus burden, genetic diversity and impact of vaccine in children under five in Tanzania
In Tanzania, rotavirus infections are responsible for 72% of diarrhea deaths in children
under five. The Rotarix vaccine was introduced in early 2013 to mitigate rotavirus infections …
under five. The Rotarix vaccine was introduced in early 2013 to mitigate rotavirus infections …
Multiplexed one-step RT-PCR VP7 and VP4 genotyping assays for rotaviruses using updated primers
MD Esona, R Gautam, KI Tam, A Williams… - Journal of virological …, 2015 - Elsevier
The current two-step VP7 and VP4 genotyping RT-PCR assays for rotaviruses have been
linked consistently to genotyping failure in an estimated 30% of RVA positive samples …
linked consistently to genotyping failure in an estimated 30% of RVA positive samples …