Stress Knowledge Map: A knowledge graph resource for systems biology analysis of plant stress responses

C Bleker, Ž Ramšak, A Bittner, V Podpečan… - Plant …, 2024 - cell.com
Abstract Stress Knowledge Map (SKM; https://skm. nib. si) is a publicly available resource
containing two complementary knowledge graphs that describe the current knowledge of …

Transcriptional deregulation of stress-growth balance in Nicotiana benthamiana biofactories producing insect sex pheromones

M Juteršek, M Petek, Ž Ramšak… - Frontiers in Plant …, 2022 - frontiersin.org
Plant biofactories are a promising platform for sustainable production of high-value
compounds, among which are insect sex pheromones, a green alternative to conventional …

Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv …

L Foix, A Nadal, M Zagorščak, Ž Ramšak… - BMC genomics, 2021 - Springer
Background Rosaceae species are economically highly relevant crops. Their cultivation
systems are constrained by phytopathogens causing severe losses. Plants respond to …

Evidence-based unification of potato gene models with the UniTato collaborative genome browser

M Zagorščak, J Zrimec, C Bleker, N Nolte… - Frontiers in Plant …, 2024 - frontiersin.org
Potato (Solanum tuberosum) is the most popular tuber crop and a model organism. A variety
of gene models for potato exist, and despite frequent updates, they are not unified. This …

Shiny-DEG: a web application to analyze and visualize differentially expressed genes in RNA-seq

S Wang, Y Zhang, C Hu, N Zhang, M Gribskov… - Interdisciplinary …, 2020 - Springer
RNA-seq analysis has become one of the most widely used methods for biological and
medical experiments, aiming to identify differentially expressed genes at a large scale …

RNA Sequencing analyses for deciphering potato molecular responses

Ž Ramšak, M Petek, Š Baebler - Solanum tuberosum: Methods and …, 2021 - Springer
Understanding the molecular mechanisms of potato development and responses to
environmental stressors is of utmost importance for achieving stable crop yields. RNA …

Multiscale modelling and systems analysis of potato spatio-temporal immune signalling: doctoral dissertation

M Zagorščak - 2021 - repozitorij.uni-lj.si
Although the reference genome of Solanum tuberosum group Phureja double-monoploid
(DM) clone is available, knowledge on the genetic diversity of the highly heterozygous …

Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas …

L Foix Pericot, A Nadal i Matamala… - … Genomics, 2021, vol …, 2021 - dugi-doc.udg.edu
Rosaceae species are economically highly relevant crops. Their cultivation systems are
constrained by phytopathogens causing severe losses. Plants respond to invading …

[引用][C] Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to …

A Esteve-Codina, A Nadal, M Zagorščak, Ž Ramšak… - 2021 - BioMed Central